Protein

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Genbank accession
UPT53062.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSRTPAVIRQRGPVVIRVGENTAAALAAAIRAEDAAANAEAFAGPTFANTAAGIAGTVDGEFFAVNASGIVTIYLNDGGSAVAQRTIATTATLAASTGASLIGHIASGSGAVARTVQDKLRDIPSPFDFDITEANDSTTGMQQWLDACFAEGVAPHSPRQLLVPVSDTIEFQIPAVSADSSSLDLGDLTLIYSGTRDRPAFKVSGDSNGGNVTPARMVLPKVRASGALQWPGTYLGEDIGILLNFVHRSPMIVVPEVRGFTKGIEYRNCSYNTMIVGDLIDNKFQEVLSSKGLEATFPLAFNNENVFIGGRRGCTSAASLLGDAYGTLLMWDESVSYRGSNNNHWYSACYELGTPAGATYRVPVWMKGVGANNAWHNTRVETCKGPTAILDGGGLNLAHSNEFNISFNNNVPQINGLLQVNDAAGNIYRGPGAKENSWRSPDLRTLLSSGGGANSPYVRGPVFIMDTTNGNPVRSTAIVGRVISNANALQLNATAVLAAVDTRRIKTFRITAATLAGFAGRPLVICFDGNGARLTGDATDVTWGNEPYCKLPGEAVVPTSGFGGGYQLAGSDGTVDRVFTVRDEVKTIYVGWNAGTNNLAIESFEITGYSEPENGRDGTDSRSGLGVFNPLADDGSVRLASAKPDTAGTHGYYARGQKVFSSVVAATATDGWPCSTAGWLAANWVASTAYAVPGQVVINGGNAYKLVTPGTSAGSGGPTGTGTAISDGTCVWDYVSPKAAFVTSAVTT
Physico‐chemical
properties
protein length:748 AA
molecular weight: 77899,01820 Da
isoelectric point:5,37614
aromaticity:0,08155
hydropathy:-0,04479

Domains

Domains [InterPro]
IPR012334
STR
80–169
IPR012334
DC_1082
ATT
85–132
DC_1082
UPT53062.1
1 748
Architecture
ATT
STR
ATT 85-132 | STR 133-169 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT53062.1
1 748
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,9802
Central domain 134 443 311 0,9923
C-terminal 444 748 304 0,7986
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-443
C-terminal
444-748

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-M3-232
[NCBI] 		2928847 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. PCC 7002
[NCBI] 		32049 Cyanobacteriota > Cyanophyceae > Chroococcales > Geminocystaceae > Picosynechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53062.1 [NCBI]
Genbank nucleotide accession
OM868076.1 [NCBI]
CDS location
range 18332 -> 20578
strand +
CDS
GTGAGCCGCACCCCTGCCGTTATCCGCCAGCGCGGGCCTGTCGTTATCAGGGTAGGCGAAAACACGGCTGCGGCGCTGGCCGCTGCTATTCGTGCCGAGGATGCCGCAGCTAATGCTGAAGCCTTCGCAGGCCCGACCTTTGCCAACACGGCGGCGGGCATTGCTGGCACGGTGGACGGCGAGTTTTTCGCGGTCAACGCATCCGGCATCGTCACGATCTACTTGAACGATGGCGGCTCGGCTGTTGCGCAGCGGACGATTGCCACCACAGCCACCCTCGCCGCCTCCACCGGCGCATCCCTGATCGGCCACATCGCCTCCGGCTCCGGCGCTGTTGCCCGCACGGTGCAGGACAAGCTACGCGACATCCCTTCCCCGTTCGACTTCGACATTACCGAAGCGAATGACAGCACCACGGGGATGCAGCAGTGGCTCGATGCGTGCTTTGCGGAAGGCGTTGCGCCGCATTCGCCGCGCCAGTTGCTGGTGCCTGTTTCGGACACAATCGAATTTCAAATTCCCGCTGTTTCGGCTGACAGTTCCAGCCTCGACCTTGGCGACCTGACGTTGATCTATTCGGGCACGCGCGACCGCCCTGCGTTCAAGGTGTCGGGCGACAGCAACGGCGGCAATGTCACCCCCGCGCGAATGGTCTTGCCCAAGGTGCGCGCTTCCGGAGCCTTGCAGTGGCCGGGAACCTATCTGGGCGAAGACATCGGCATCCTGCTCAATTTTGTGCACCGATCTCCCATGATCGTCGTGCCGGAAGTCCGTGGCTTCACCAAGGGCATCGAGTATCGCAACTGCTCATATAACACGATGATTGTTGGCGACCTGATCGACAACAAGTTTCAGGAGGTGCTTTCCTCCAAGGGGCTGGAGGCGACCTTCCCGCTGGCGTTCAACAACGAAAACGTCTTTATCGGCGGGCGGCGCGGCTGCACGTCGGCGGCGAGCCTGCTTGGCGATGCCTATGGAACGCTGCTGATGTGGGACGAGTCCGTTTCCTATCGCGGCAGTAATAACAACCACTGGTATTCTGCGTGTTACGAGCTAGGCACTCCCGCCGGGGCGACCTATCGCGTGCCGGTATGGATGAAGGGCGTCGGGGCGAACAACGCGTGGCACAATACGCGCGTCGAAACCTGCAAAGGGCCGACAGCTATTCTTGACGGTGGCGGGTTAAACCTAGCGCACAGCAATGAATTCAATATTAGCTTCAACAACAACGTCCCGCAGATTAACGGGTTGTTGCAGGTCAATGACGCGGCAGGGAATATCTATCGCGGCCCCGGCGCAAAGGAAAATTCGTGGCGCTCTCCGGATTTGCGCACGTTGCTGTCATCGGGCGGCGGGGCGAATAGCCCCTACGTTCGGGGGCCTGTGTTCATCATGGATACCACGAATGGCAATCCGGTTCGCAGCACCGCGATTGTAGGCCGTGTGATCTCAAATGCTAACGCACTACAGCTAAATGCCACCGCCGTGCTTGCTGCGGTCGATACACGCCGGATCAAGACGTTTCGGATTACTGCCGCAACGCTTGCGGGATTTGCCGGTCGTCCGCTTGTCATCTGCTTTGATGGAAACGGCGCGCGACTGACCGGCGATGCGACCGATGTGACGTGGGGCAATGAGCCTTATTGCAAGCTGCCGGGTGAGGCTGTTGTCCCGACATCTGGTTTTGGCGGCGGCTACCAATTGGCCGGGTCAGACGGCACGGTTGATCGTGTCTTTACCGTCCGCGATGAGGTCAAGACCATCTACGTGGGGTGGAACGCTGGCACTAACAATCTTGCAATTGAGTCTTTTGAAATCACCGGATATTCCGAGCCTGAAAACGGCAGGGATGGAACAGACAGCCGCTCGGGCCTTGGCGTGTTCAACCCTCTGGCTGACGACGGTTCTGTGCGCCTTGCTTCGGCAAAGCCCGATACTGCCGGAACGCATGGATACTACGCACGCGGCCAAAAGGTGTTTTCCAGCGTGGTGGCGGCGACGGCGACCGATGGTTGGCCTTGTTCGACCGCAGGCTGGCTTGCCGCCAACTGGGTCGCCAGCACGGCCTATGCCGTGCCGGGTCAAGTCGTCATCAACGGAGGCAATGCCTACAAGCTGGTGACTCCGGGAACATCCGCTGGATCGGGCGGCCCGACTGGCACCGGGACGGCGATCAGCGACGGAACCTGCGTCTGGGATTACGTGTCGCCCAAGGCCGCGTTCGTGACCTCGGCGGTGACGACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ef9bc6eeb9a38aec782b0db5af749720f9cbdaf130894ea2ea0dcb93f8f73c20
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6805
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-M3-232 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank