Protein

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Genbank accession
AVQ09850.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MAYVQHSIYTDYDVIGRSFWLKTGESIDRRDYTGIDTFFVMINNLIPSTSYEIQGAFYDSIIDSELLEAKIGINLSNETNFRTKEKPTIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFVPPTAPIDIVFKAARIADGKERYDVRIEWDWERGTGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESVPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGDTLRISSGVVIGTPNGDVDIGTGMQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLAGTSWSDVVQWSGTEGTIGHDGQRGPGMYSLGIPGLGGWDDGQANTFFQNNFGSPPVRYDVLTEFNSNAPQSAFTRQWNGSGWINPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:665 AA
molecular weight: 72798,74630 Da
isoelectric point:4,82798
aromaticity:0,10526
hydropathy:-0,25233

Domains

Domains [InterPro]
IPR057550
STR
2–77
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
83–177
IPR057551
AVQ09850.1
1 665
Architecture
STR
STR
STR
STR
STR 2-77 | STR 83-177 | STR 191-315 | STR 330-644 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVQ09850.1
1 665
Domain Start End Length (AA) Confidence
N-terminal 1 388 388 0,8991
Central domain 389 596 209 0,2322
C-terminal 597 665 68 0,4762
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-388
Central
389-596
C-terminal
597-665

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_PHB06
[NCBI] 		2136178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVQ09850.1 [NCBI]
Genbank nucleotide accession
MH102285.1 [NCBI]
CDS location
range 14116 -> 16113
strand +
CDS
ATGGCATATGTCCAGCACTCTATATATACTGACTATGACGTTATTGGCAGATCTTTTTGGTTAAAGACAGGAGAAAGTATAGATAGACGTGATTATACTGGTATAGATACTTTCTTCGTAATGATTAATAATCTGATCCCTTCAACCTCTTATGAGATTCAAGGGGCTTTCTACGACTCTATTATTGATTCTGAACTACTAGAGGCTAAGATTGGTATCAATCTCTCTAATGAGACTAACTTTAGGACAAAAGAGAAGCCAACAATTGTTGCAGCAAGATCTGAATCAGAACCTGTGGATGTTGGGGTAGGTGCACCGATAGTTGTCGTAGAAACAACTGGTGAAGCAAGCTACTGTACTATTGAGTTAAAAAGTACAGCTACTGAAGACAGTCCTTGGACTAAGTATTACATTGGTGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTACAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGGTATTATGAATTCCCTAATATTTTAACTGTAGCGTATAATTTTGTTCCTCCTACCGCACCTATCGATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGATATGATGTTAGAATTGAGTGGGATTGGGAACGCGGAACTGGTGCTAATGTTCGTGAGTTCTTGGTTACTTATATAAACTCTGAAGAATACGCTAAGACTGGATGGGCTAAAGCTCAAAAGATAAACGTTGGTGCTGCCAGAGCTGCAACAATTATATCATTCCCCTGGAAAGTTGAGCATACCTTTAAGGTTTCGTCAATTGCCTGGGGACCAAATAAGCAGGATATAACAGAATCAGTTCCTGTAACATTTATACTGAATGAAGATACTCCTCTAGATAACAGCTTTGTCAATGAGACGGGTATTGATGTTAACTATGCCTTTATTAAGGGCAGCATGAAAGATGGAGAAATCTGGAGACAGACATTCTTAATCGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGACGAAGAAGGAAAAGCACCTATTTCTTTTGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACTAACTTATCTGGTAAGGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGGGATAATAACTCTGGTATTTGGATGGGTATGGATAATACCTCTGCCAAAGCTAAGTTAGACATTGGTAATGCCACACAGTGGATTCGTTATGATGGTGATACTCTTCGTATATCTAGTGGAGTTGTTATTGGAACTCCTAATGGTGACGTAGATATTGGTACTGGGATGCAGGGTAAACAAACAGTATTTGTTTATAAGTTAGCAACATCTCTACCCGCTAAACCACTAGAACAAGATTATCCGCCCCCTGGTTGGTCAAAAACTCCACCTAATCGTACAGATATGACACAAAATATCTATGCGACTACTGGTACACTTGATCCAGTTACTAATAAACTTCTTGCAGGTACTAGCTGGTCTGACGTAGTTCAGTGGAGTGGTACTGAAGGTACTATAGGACATGATGGGCAACGTGGTCCTGGCATGTATTCCTTAGGTATTCCAGGTCTTGGTGGTTGGGATGATGGGCAAGCTAATACCTTCTTCCAGAATAACTTTGGTAGTCCACCAGTTAGATATGATGTATTGACTGAGTTTAATAGTAATGCTCCACAATCCGCATTTACTCGTCAATGGAATGGTTCCGGTTGGATTAACCCTGCAATGGTTCTTCATGGCAACATGATTGTTAATGGAACTGTGACTGCTGATAAGATTGTGGCAGGAAATGCCTTCTTATCACAAATCGGTGTTAATATAATCTATGATAGAAATGCTGCGTTATCAGGGAACCCTGAAGCATACTATAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fb32fcce0884de58902253409aac3b6099b727bd2587661124686eef5138950e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7667
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three Siphoviridae Salmonella enterica serovar enteritidis bacteriophage show promising potential for phage therapy Chen,Y., Sun,E., Wu,B. and Song,J. 2018-11 — GenBank