Protein

View in Explore
Genbank accession
BCG50062.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSGLIEAPGLTKVQGNAVIASATAQATAAAASAATAQTAATQAQTAIPPVQVVDYTALRAYTGTATVLQVTGYLVSSSPSGIVGLFVRDDSDTTSTDNGGTIIVVTSGVNTGKRYKRSYVGGVNIQWFGALGVGSSNDDSTAIQAATNAANTKKETVIFPPTAAHYKLSTVITVPDGVNIYALGATVKRYHAYTVANSAFQLSGSSVIYGMTYDGNASGINDLSNFTLYNDFNCAPTVGGQEARIRFDTCIFLNSPGSFILPGCARDLEITNNKFYEYTDHCIYAGNTANPTQNITVSNNVFRATSGATTREAIKTRKGVNGYSIFGNTFYLPNASAMTLDFGDVTDANNRNTRISINNNNGICQKFVGAIGSFKAGDPGDKCNADIEILNNVIDCTYFFLIGTFNWTQVAGTYASADSIVIQDNIIKGGSIVAFGQKDRPVRVGSGATATAVLTGNSVTSITVGSGGSGYTRNPVVALRDSTNTGFGAVAKATLSGGVITGFTVISGGINYTSAPTVYFEEYGINSFIVKNNTFLPREEVSAAAPGGITAMGDIGYIEITGNVFECMTSNYYGANSPVSVVGTTTSAQTRAALHNDVLRGAPAKPRSILIERNYISMSNSLMYEGGSAGLASDGSMINDYDTLLIGDNIFDLKFVAAGASAQAVSVGNSTRAKWFFVRNKQVNHTTGITVCDLSGPRLLWTTPSNATFGDAGIPRGSKTYDPPSVAAGSSVTTTVSIANAFLGDPVTAAFSLSLGGLTLSAYMSSNGTATCVFFNPTASAIDIASGTLSVVSHQ
Physico‐chemical
properties
protein length:795 AA
molecular weight: 82547,14650 Da
isoelectric point:5,93816
aromaticity:0,08805
hydropathy:0,06352

Domains

Domains [InterPro]
DC_0717
ATT
17–159
DC_0717 IPR006626 IPR006626 DC_0706
IPR012334
STR
123–367
IPR012334 IPR006626 IPR006626 IPR006626
IPR011050
STR
131–468
IPR011050
BCG50062.1
1 795
Architecture
ATT
STR
ATT 17-159 | STR 160-795
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BCG50062.1
1 795
Domain Start End Length (AA) Confidence
N-terminal 1 135 135 0,9853
Central domain 136 706 572 0,9912
C-terminal 707 795 88 0,9804
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-135
Central
136-706
C-terminal
707-795

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RP13
[NCBI] 		2743402 No lineage information
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BCG50062.1 [NCBI]
Genbank nucleotide accession
LC554890.1 [NCBI]
CDS location
range 24541 -> 26928
strand -
CDS
ATGAGTGGTCTTATTGAAGCTCCTGGTCTTACAAAGGTGCAAGGTAATGCTGTAATTGCTTCTGCTACTGCACAAGCTACTGCAGCTGCAGCTAGTGCAGCCACAGCTCAAACTGCAGCTACTCAAGCTCAGACTGCTATTCCACCAGTGCAAGTTGTGGATTATACAGCATTACGAGCATATACTGGTACAGCAACAGTATTACAAGTAACAGGATATTTAGTTAGTTCTTCTCCATCAGGTATTGTGGGATTATTTGTCAGAGATGATAGTGATACTACTAGTACAGATAATGGTGGAACAATTATTGTTGTTACTTCTGGGGTCAATACTGGTAAAAGATATAAGCGTAGTTATGTAGGTGGTGTAAATATACAATGGTTTGGAGCTCTTGGTGTAGGTTCATCAAATGATGATTCTACTGCCATTCAAGCAGCCACCAACGCAGCTAATACTAAGAAGGAAACTGTAATATTTCCTCCAACAGCTGCTCATTACAAATTATCTACTGTTATTACTGTACCTGATGGTGTTAATATTTATGCTCTAGGAGCAACAGTTAAGCGTTATCATGCCTATACAGTGGCCAACTCAGCATTCCAATTATCAGGAAGCTCAGTAATCTACGGTATGACTTATGATGGCAATGCATCTGGTATTAACGATCTATCTAATTTTACTTTATATAACGATTTTAATTGTGCACCAACTGTAGGTGGACAAGAAGCACGTATTAGATTTGATACATGTATTTTTCTTAATTCTCCAGGTAGCTTCATATTACCCGGATGTGCAAGAGATTTAGAAATTACTAATAATAAGTTTTACGAATATACAGATCATTGTATTTACGCTGGTAATACTGCTAACCCTACACAAAATATTACTGTTAGTAATAATGTATTTCGTGCTACATCTGGTGCTACAACTCGTGAAGCAATTAAAACTCGTAAAGGTGTAAATGGTTATTCAATATTTGGTAATACATTCTATCTGCCAAATGCTTCAGCAATGACCTTGGATTTTGGTGATGTTACCGATGCCAATAATCGTAACACACGTATTTCTATTAATAACAATAATGGTATTTGCCAAAAGTTTGTAGGTGCTATTGGCAGCTTTAAAGCTGGTGATCCAGGTGATAAGTGTAATGCGGACATTGAGATTTTAAACAATGTCATTGATTGCACATACTTCTTCCTAATTGGTACATTTAATTGGACTCAAGTAGCCGGTACATATGCATCAGCTGATTCTATTGTAATTCAAGATAATATTATTAAGGGTGGATCAATTGTAGCATTTGGTCAGAAGGATAGACCAGTACGCGTAGGTTCTGGAGCTACAGCAACTGCTGTATTAACTGGTAATTCTGTTACATCTATTACTGTAGGTTCTGGGGGTAGTGGATATACTCGTAATCCTGTAGTGGCATTACGTGATAGTACTAATACTGGCTTTGGTGCTGTGGCTAAGGCTACATTATCTGGTGGTGTAATCACAGGGTTTACAGTAATTAGCGGTGGTATTAATTATACGTCAGCACCAACTGTGTATTTTGAAGAATATGGTATTAATTCTTTTATTGTAAAGAATAACACATTCTTGCCACGTGAAGAAGTGAGTGCAGCTGCTCCAGGTGGTATTACAGCTATGGGGGATATAGGCTATATTGAAATTACTGGTAATGTATTTGAATGCATGACCTCTAATTACTATGGTGCTAACTCCCCTGTTAGTGTAGTTGGTACTACTACCAGTGCACAAACACGTGCCGCATTACATAATGATGTATTAAGAGGTGCTCCAGCCAAACCTCGTTCTATTTTAATAGAACGTAATTACATAAGCATGTCCAATAGCTTAATGTATGAAGGAGGTAGTGCAGGATTAGCTTCTGATGGCAGTATGATCAATGATTATGATACACTATTAATTGGTGATAATATCTTTGATTTGAAGTTTGTTGCAGCTGGAGCTAGTGCGCAAGCAGTATCTGTTGGTAATAGTACTAGAGCTAAGTGGTTCTTTGTACGTAATAAACAAGTAAATCACACTACAGGTATTACTGTATGTGATTTATCTGGCCCACGATTACTATGGACTACACCTTCAAATGCTACATTTGGAGATGCTGGTATTCCTCGTGGATCTAAAACATATGATCCACCTAGTGTAGCTGCTGGCTCTTCTGTTACTACTACAGTATCAATTGCTAATGCATTTTTAGGTGACCCTGTGACTGCAGCATTTTCACTAAGTCTTGGTGGTCTTACACTTAGTGCATATATGTCATCAAACGGCACAGCAACCTGCGTATTCTTTAATCCGACAGCTAGTGCTATTGATATTGCATCAGGTACACTTAGTGTTGTTAGTCATCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4c52bc3909afe0dba36a9b1e70ad46831bd3bad5f2d8b434f024c489ba0e9d67
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a phage RP13 infecting the phytopathogen Ralstonia solanacearum Kawasaki,T., Fujie,M., Chatchawankanphanich,O., Ogata,H. and Yamada,T. 2010-03 — GenBank