Protein

View in Explore
Genbank accession
XPK43254.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGKAGAIDLTEKYLQKTDAESTYLTKTDGATKVYVADSIAPIMEGALFKADPFVANDVPFRAAGANGVESVDMIKVTPENTIKIGSYASSVQGVEVHTAGRLQVVDLNDGGVETKYPIYSKRYRPEIDELPFAAIGSYVKDSKGRTIGVNRTGINSDITQMTQKVTFTQPVTVADAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVFSDGQLLSRAEYPDLWAYAQLLSPIEDSLWLSDKFKRGRYSTGDGSTTFRVPDRNGVQEGSIRALYARGDGGASSANGDVFESAAPNISGYVTSYSGGSYAQVFGANYGSLYADNSTYPAAAGDAIPDTGAVSLEGRYNTLHIDASRSNAIYGASADEIMGRNFVGVWTIRAHGGFTAANTSWSVINSDASEPPSGTPITGGLVSSKYLVGGVDKYRSSLQLQGANEVDLSTRLTTINDRYAIGAATWDFKLDGKLLFNKSLTPNGIGYSPGNTYLTLANTWMTSPYSGYVGFVGGGVGVSAGGWRNFISLGSLIFPDTSHPTAVISQVYDYDLSTGNQPNGDIVRNTYFIAESYDITFGNNSGTTNYIFSKSPVSDERLKHSIKEEGTATALSNLNKMEYKTFIYNYDEKATTRRGFIAQQLEAIDPQYVRKYKTFKGTDTLALDENVLLLDAIAAIQELTKKVEALEAKLAEK
Physico‐chemical
properties
protein length:730 AA
molecular weight: 78373,37130 Da
isoelectric point:5,19607
aromaticity:0,09863
hydropathy:-0,24849

Domains

Domains [InterPro]
DC_1514
STR
20–315
DC_1514 DC_1985
SSF88874
STR
249–429
SSF88874 IPR030392 Coil
IPR030392
CHP
631–727
IPR030392
XPK43254.1
1 730
Architecture
STR
RBD
STR 20-429 | RBD 470-730
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK43254.1
1 730
Domain Start End Length (AA) Confidence
N-terminal 1 73 73 0,9776
Central domain 74 272 200 0,5196
C-terminal 273 730 457 0,7817
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-73
Central
74-272
C-terminal
273-730

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage StefiGeyer_Bas88
[NCBI] 		3398435 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK43254.1 [NCBI]
Genbank nucleotide accession
PQ850628.1 [NCBI]
CDS location
range 11439 -> 13631
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCACGTGGTAGTTACTAGAGATGCCGCAGTTGTGGGTGTTTCTACAGTTGATGGTAAAGCGGGAGCTATTGATTTAACAGAGAAGTATTTACAGAAGACGGATGCTGAGAGTACTTATTTAACTAAAACTGATGGAGCTACTAAGGTTTATGTTGCAGATTCTATTGCCCCTATAATGGAGGGTGCTCTGTTTAAAGCTGACCCTTTTGTAGCTAATGATGTGCCCTTTCGTGCTGCTGGGGCTAACGGTGTAGAGTCTGTTGATATGATTAAAGTAACACCAGAGAATACTATCAAGATTGGCAGTTATGCTTCTTCTGTTCAAGGTGTAGAAGTCCACACTGCTGGTCGTCTTCAAGTTGTAGATTTGAATGATGGTGGTGTAGAAACTAAATATCCTATCTACTCTAAACGATATCGTCCTGAGATTGATGAACTTCCCTTTGCAGCGATTGGTTCTTATGTCAAGGACTCTAAGGGTCGCACCATTGGTGTAAATCGTACTGGTATTAACTCTGATATAACTCAAATGACTCAGAAAGTAACCTTTACACAACCGGTAACTGTTGCAGATGCTGTTGGTGACTATGATGCAGTAACTTTAAGACAGCTTCGTAATAGTGGTGGTGGTTCTGGTGGTCCTACCATGAGTGGTATCTCCAACTTTGGCATTGGTGATTTTCATCTTCGTGATAGCCGAGCTTTCATTCCAGCTTTTGAAGTTTTTTCTGATGGCCAACTGTTGAGTCGTGCGGAATATCCAGATCTTTGGGCATACGCTCAACTTCTTTCTCCAATTGAAGACTCTCTGTGGCTATCTGATAAATTTAAGCGTGGTAGATATAGTACTGGAGATGGTTCTACCACATTCAGGGTTCCTGATAGAAATGGTGTTCAAGAAGGTTCCATTCGTGCTTTGTATGCTCGTGGTGATGGTGGTGCTTCTTCTGCTAACGGGGATGTTTTTGAATCAGCAGCACCGAACATCAGCGGTTACGTGACTTCCTATTCTGGAGGTTCTTATGCTCAGGTATTCGGGGCTAATTATGGATCATTGTACGCAGATAACAGTACTTATCCAGCGGCTGCGGGTGATGCGATTCCCGACACAGGTGCTGTTTCCCTTGAGGGAAGATATAACACTTTACACATCGACGCATCTCGTTCCAATGCTATATATGGTGCATCAGCTGATGAAATCATGGGTCGTAACTTTGTTGGTGTTTGGACTATCCGTGCTCATGGTGGATTCACTGCTGCTAATACTTCTTGGTCTGTTATTAACAGTGATGCCTCAGAACCTCCTAGTGGTACACCGATTACTGGTGGTTTGGTTTCTTCTAAATACCTAGTGGGTGGTGTAGATAAGTACCGTTCTTCCCTTCAACTACAAGGTGCTAACGAAGTCGATCTATCTACAAGACTTACAACAATAAACGATAGGTATGCAATTGGGGCAGCTACTTGGGATTTTAAACTGGATGGTAAACTACTTTTTAATAAATCACTTACCCCCAATGGGATAGGCTATTCTCCAGGGAATACATACCTAACCCTAGCTAATACATGGATGACCTCTCCTTACAGTGGATATGTTGGTTTCGTTGGTGGTGGTGTTGGGGTTTCTGCTGGCGGTTGGAGAAACTTTATTTCTTTAGGGTCTTTGATTTTCCCTGATACAAGTCATCCTACTGCTGTTATTTCTCAGGTTTATGATTATGACCTTTCTACAGGAAACCAACCTAATGGAGATATTGTCAGAAATACCTATTTCATTGCTGAGAGCTATGATATCACTTTTGGAAACAACAGTGGGACTACCAATTACATCTTCAGTAAGTCTCCAGTCTCTGACGAACGGCTAAAACATAGCATTAAGGAAGAAGGGACAGCCACAGCTCTTTCTAACTTAAATAAGATGGAGTATAAAACCTTTATCTATAATTATGATGAGAAAGCAACTACAAGGCGTGGATTTATTGCCCAGCAACTTGAAGCTATTGACCCTCAATATGTTAGGAAGTATAAAACCTTCAAAGGTACTGATACCCTAGCTTTAGATGAGAATGTGTTGCTTTTAGATGCAATTGCTGCTATTCAAGAGCTTACCAAAAAGGTTGAGGCTTTAGAAGCAAAATTGGCAGAGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
56758732c96722bc3826a8453dc5cf8e84c81fb4c28be89d25d975ba769f652b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank