Protein

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Genbank accession
AFP33698.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MEVQGSYGRLIHGMSQQPAAVRLDGQVTYQLNTVPDVVDGVQTRPGTEHIAVLSDGYPAMTHFHHYRRGDDIEEYFITTKPNEPPEVFDKAGRKCVVSVDPSVEQYVRNADPYKNIRMLTVADYTFIVNKTVPVRAAPDMTPSVGDTALVFCAFGQYGVSYKIFIGGVQAALYMTPDGSDAGHVVYIKTEHIARILHEQLLLWEGIGDYTTSRDGTTITIKKNDGTEIEVTTEDGSKGKDLVAIKNRTTSTDLLPSRAPSGYKVQINPTGSKPESRYWLEAVPKEGGNLVAWRECLAPDSLVGFNKNTMPHILVRDDIVDGLAHFRLRQGDWVDRDVGDDLTNPFPSFLDQTIGGLFMVQNRLCFSNGEAVAMARTSRFFEFFRPTVLSALATDPIDTYSDASEVYELTDSVSLDGDTVLFSRTAQFLLPGDRALTKENTVMRPTTTFECAPNVPPVATGDSVMFAFTEGSYSGVREFFTDSTTDTKKAQPTTYHVNKLIEGNIRVMEASSNFNRMFVLTDRRQHRVYVYDWLWQGQEKVQSAWHIWEFPEGSVVHSMFYSMERVYVIITRPDGMSYLEVMEMGDPLLGEDDDQNRLDRRVPVRFTYDTFVGVWLSDELPYKPRTETVDAVIGVGGHDAYRGGSFLFSYDADGNRLSTTFDLGEESGAVTCWVGETYPVELEPSQALIKDSKGRVSYLDVPTVGQVWLNTDKAPPFSVEVTYTKTGRKREISLSNRVGGAITNTGGRVVPHEMTHRVPLRAKSTDVTFRIKVQSPHTFQLRDVEWDGSYNPRRKRM
Physico‐chemical
properties
protein length:796 AA
molecular weight: 89225,27030 Da
isoelectric point:5,32930
aromaticity:0,10050
hydropathy:-0,37776

Domains

Domains [InterPro]
IPR058003
TTP
3–796
IPR058003
AFP33698.1
1 796
Architecture
TTP
TTP 3-796
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFP33698.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9926
Central domain 144 351 209 0,0700
C-terminal 352 796 444 0,2587
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-351
C-terminal
352-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PP1
[NCBI] 		1217810 Uroviricota > Caudoviricetes > Autographivirales > Molineuxvirinae > Axomammavirus
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFP33698.1 [NCBI]
Genbank nucleotide accession
JQ837901 [NCBI]
CDS location
range 27009 -> 29399
strand +
CDS
ATGGAGGTACAAGGTTCATATGGTAGGCTTATACATGGTATGTCTCAGCAGCCAGCGGCGGTTCGTTTAGATGGGCAGGTAACCTACCAACTGAACACTGTCCCTGATGTAGTTGATGGCGTACAGACAAGGCCGGGAACTGAGCACATCGCGGTGCTGTCTGACGGTTACCCAGCTATGACACACTTCCACCATTACCGCAGAGGTGATGACATTGAAGAGTACTTCATAACAACCAAACCAAACGAGCCCCCAGAGGTGTTCGACAAGGCAGGACGTAAGTGTGTTGTGTCGGTAGACCCTAGTGTAGAGCAGTATGTGCGCAATGCAGACCCGTACAAGAACATCCGTATGCTAACGGTTGCAGACTACACGTTCATTGTTAACAAAACCGTACCTGTTCGTGCAGCGCCTGACATGACACCCTCCGTTGGTGACACTGCGCTAGTGTTCTGTGCGTTTGGTCAGTATGGTGTGTCGTATAAAATCTTTATTGGTGGAGTGCAAGCGGCACTATATATGACACCTGATGGTAGCGATGCAGGTCATGTCGTCTATATAAAGACAGAGCACATCGCAAGAATATTGCATGAGCAGTTGCTTTTGTGGGAGGGCATAGGAGACTACACCACATCAAGGGATGGCACTACAATCACCATCAAGAAGAATGACGGAACAGAGATAGAGGTGACGACAGAGGACGGATCTAAGGGTAAGGACTTGGTTGCCATTAAGAACCGAACAACCTCAACCGACCTTCTTCCATCCCGTGCACCTTCTGGGTACAAGGTACAAATTAACCCTACGGGCAGTAAGCCTGAGTCGCGTTATTGGCTTGAGGCTGTTCCAAAAGAAGGTGGTAACCTTGTTGCGTGGCGTGAGTGCTTAGCTCCTGATTCCCTAGTGGGGTTTAACAAGAACACAATGCCACACATCTTGGTTCGTGATGACATTGTGGATGGTTTGGCTCACTTCCGCCTACGTCAAGGTGATTGGGTAGACCGTGATGTCGGCGACGACCTTACCAACCCATTCCCTTCCTTCCTTGACCAGACAATCGGTGGCCTGTTTATGGTTCAGAACAGACTGTGCTTCTCTAATGGCGAGGCTGTGGCTATGGCTCGTACCTCTCGCTTCTTTGAGTTCTTCCGCCCAACCGTGTTGTCTGCGCTGGCGACCGACCCAATTGACACTTACTCCGATGCGAGCGAGGTCTATGAGTTGACGGACTCTGTTTCTCTGGACGGCGATACCGTACTCTTCTCCCGTACAGCGCAATTCCTGCTACCGGGAGACAGGGCGTTAACCAAAGAGAACACAGTGATGCGACCTACGACGACATTCGAGTGTGCACCTAACGTACCTCCTGTAGCTACTGGTGATTCTGTTATGTTCGCATTTACAGAAGGCTCTTACTCAGGTGTGCGTGAGTTCTTCACTGACTCTACAACGGACACGAAGAAGGCACAGCCGACAACGTACCACGTAAATAAGTTGATTGAAGGTAACATCCGTGTGATGGAGGCCAGCTCTAACTTCAATCGCATGTTTGTCTTAACAGACAGACGACAGCACCGTGTTTACGTGTATGACTGGTTGTGGCAAGGGCAGGAGAAGGTACAATCTGCATGGCACATCTGGGAGTTCCCAGAGGGTAGTGTGGTTCACTCTATGTTCTATTCTATGGAAAGGGTGTATGTCATCATAACCAGACCTGATGGTATGTCATACCTTGAGGTTATGGAGATGGGCGACCCTTTATTGGGTGAAGATGATGACCAAAACAGACTAGATAGACGTGTGCCTGTGCGCTTCACTTATGATACCTTTGTAGGGGTTTGGTTATCAGACGAACTACCGTACAAACCGCGAACCGAGACAGTTGATGCGGTAATCGGGGTGGGTGGGCATGATGCGTATCGCGGTGGTTCCTTTCTCTTCTCGTACGATGCAGATGGAAACCGATTGTCTACCACGTTCGACTTAGGGGAAGAGAGTGGAGCTGTGACTTGTTGGGTTGGTGAGACTTATCCCGTTGAGTTAGAGCCATCTCAGGCTTTGATAAAGGACAGCAAGGGTAGGGTTTCTTATCTGGATGTACCAACTGTAGGTCAAGTGTGGCTTAACACAGACAAGGCACCGCCATTCTCTGTAGAGGTGACATACACCAAGACAGGTCGAAAGCGTGAGATTAGCCTATCGAACCGAGTAGGTGGTGCCATCACCAACACAGGTGGTCGTGTTGTGCCTCATGAGATGACGCACCGTGTGCCTTTGCGTGCCAAGAGCACAGATGTGACTTTCAGAATAAAGGTGCAATCCCCGCACACGTTCCAGTTACGTGATGTTGAATGGGATGGCTCATACAACCCACGGAGAAAGAGGATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c6f3b0b733b7e6800ec1417928b6f9f01850bf97a92680d9f089b95056175c95
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9249
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Phytopathogenic Pectobacterium carotovorum subsp. carotovorum Bacteriophage PP1 Lee,J.H., Shin,H., Ji,S., Malhotra,S., Kumar,M., Ryu,S. and Heu,S. 2012 22843859 GenBank