Protein

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Genbank accession
YP_009884380.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTQLPLVLAIPRFKENEERVDKLVNGTALETWQTSGGVTLPSFAKFLADKDDEIDSAAESAAAAALSASAAALSAATSETNAANAINRANHIGTQSIFTIVEFNAFNADDSGLVDVSAAFQAIVNTFPYVRVVTGEYLIDDNVTVPSTCVVIFDNGAKLKIGTDVIITWNGGIIADAYQQIFSGDLVQSSYVSNSLTPYILGLQGNPRIPWSSPFWFGAKGDNVTDDYNAFVCSFFFGPGSYVPGLDIESGQRYLCSTSIPVRRSMFIKGDGYRSWMRLVAFTPSGVGQFIGIAGLLPTVSGGQPAVFVDNILIDGIHVDTNNGTNDNGIGGSMCRNVEVRNCFFSNVGRKAVTFQYHVHNHYVHHNWVLSASMETAGNQNVFTTEGENSSFTYSNGVVGFDHDGADNTGHVFDSNHIEVSGVGGVTLSNCRRSVVRNLTMNTLGATGRPIVTGRVVKDVIFENIFCKTSTLGFIHAGSATSISVKFINCWIENCSGDEMFYSEGPGAQFINSGGTQTDDRLAWSIRGTDCKILNCRLEMTAITSATQATSLFSTASRFEMKDCYINSANALRGFGGSTAADIKIIGNHFTGGVTDGISISGANFLCINNIIGGNAINRIVTAATAINGVCTGNILTGGASAQINMNNTSLFSSVKCNNPGDTNTGDNMFLGINALWQDSTGDLRIMTSGALRASDTDGVIVGTQT
Physico‐chemical
properties
protein length:706 AA
molecular weight: 74984,98010 Da
isoelectric point:4,98151
aromaticity:0,08924
hydropathy:0,04093

Domains

Domains [InterPro]
DC_1322
ATT
1–137
DC_1322 IPR012334 DC_0672
IPR011050
STR
129–500
IPR011050
YP_009884380.1
1 706
Architecture
ATT
STR
RBD
ATT 1-137 | STR 138-516 | RBD 615-706
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009884380.1
1 706
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,9852
Central domain 118 661 545 0,9694
C-terminal 662 706 44 0,9326
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-661
C-terminal
662-706

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage ort11
[NCBI] 		2599764 Uroviricota > Caudoviricetes > Schitoviridae > Huelvavirus ort11 >
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009884380.1 [NCBI]
Genbank nucleotide accession
NC_049469.1 [NCBI]
CDS location
range 59552 -> 61672
strand -
CDS
ATGACTCAGCTTCCCCTCGTCCTTGCTATCCCTCGTTTCAAAGAGAATGAGGAGAGAGTAGATAAGCTTGTTAATGGTACAGCACTGGAAACTTGGCAAACGAGTGGGGGAGTAACTCTCCCCTCTTTCGCTAAGTTCCTTGCTGACAAAGATGATGAAATTGATAGTGCAGCAGAATCCGCTGCTGCTGCTGCATTGAGTGCGAGTGCTGCTGCTCTGAGTGCTGCAACTTCTGAGACCAATGCAGCTAACGCAATCAACAGAGCCAATCACATTGGCACACAAAGTATCTTCACCATAGTTGAGTTTAATGCATTCAATGCTGATGACTCTGGTTTGGTAGATGTTTCTGCTGCTTTCCAAGCAATAGTTAACACATTCCCATACGTTAGAGTTGTGACTGGTGAGTACCTTATTGACGATAACGTTACTGTTCCAAGCACATGTGTAGTTATCTTTGATAATGGTGCTAAACTGAAAATTGGTACAGATGTAATTATCACATGGAACGGTGGTATTATTGCTGATGCTTACCAACAGATTTTCAGTGGTGATCTTGTTCAAAGTTCCTATGTGAGCAACTCACTGACTCCATATATCCTTGGTCTCCAAGGTAATCCTAGAATCCCTTGGTCCTCTCCTTTCTGGTTCGGCGCTAAAGGTGATAATGTCACCGATGATTACAATGCCTTTGTTTGCTCCTTCTTTTTTGGTCCTGGTTCCTATGTACCGGGATTGGATATTGAGTCGGGTCAAAGATATTTGTGCTCTACGTCCATTCCAGTTCGTCGCTCTATGTTCATCAAGGGTGATGGTTATAGATCATGGATGAGACTGGTAGCATTTACACCATCTGGTGTAGGTCAATTTATTGGCATTGCTGGTCTTTTGCCTACAGTTAGTGGGGGTCAACCTGCGGTATTTGTAGACAATATCCTGATCGACGGTATCCATGTTGATACCAACAATGGAACCAACGACAACGGTATCGGCGGTTCTATGTGCCGGAATGTCGAGGTTCGAAACTGCTTCTTCTCTAACGTTGGACGGAAGGCAGTCACCTTTCAGTACCACGTTCATAATCATTACGTGCATCACAACTGGGTTCTTTCTGCCTCTATGGAGACTGCTGGTAATCAGAATGTGTTTACCACAGAAGGAGAGAACTCATCCTTCACCTACTCTAATGGTGTTGTAGGTTTTGATCATGATGGTGCGGATAACACAGGACATGTGTTTGATAGCAACCACATTGAAGTTAGTGGTGTTGGTGGTGTTACCTTGTCGAACTGTAGACGATCTGTGGTTCGTAACCTCACTATGAACACTCTTGGTGCAACAGGTCGTCCTATTGTTACAGGTCGTGTTGTCAAGGATGTCATCTTTGAAAACATTTTCTGTAAAACTTCTACACTTGGTTTCATCCATGCTGGTTCAGCAACATCTATTTCTGTCAAATTCATCAATTGCTGGATTGAGAATTGCTCTGGTGATGAGATGTTCTACTCGGAAGGACCGGGAGCACAGTTCATAAACAGTGGTGGTACACAGACAGATGACAGGCTCGCATGGTCTATTCGTGGTACAGACTGCAAGATTCTCAATTGCCGTCTAGAAATGACTGCTATTACCTCAGCTACACAAGCAACGTCCTTGTTTAGTACAGCATCTCGTTTTGAAATGAAGGATTGCTATATCAACAGTGCGAATGCTCTTCGTGGTTTTGGTGGTTCAACTGCTGCTGATATCAAGATTATTGGGAATCATTTTACAGGTGGTGTTACAGACGGAATCAGTATTTCGGGCGCTAACTTCCTGTGTATTAATAACATTATTGGCGGTAACGCCATCAATCGTATTGTGACAGCGGCAACCGCTATTAATGGTGTTTGTACAGGGAACATTCTTACAGGTGGTGCATCTGCACAGATTAACATGAATAACACTTCCCTGTTTTCATCTGTCAAATGCAACAATCCGGGGGACACAAATACAGGGGATAATATGTTCCTCGGGATTAATGCTCTCTGGCAAGATTCCACAGGTGATCTACGAATTATGACCTCAGGTGCTCTAAGGGCAAGTGATACGGATGGGGTGATTGTAGGAACTCAAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4eded289d7e2ce40d1071f8bc154f55863223911a915fffd7d25ac1e326bfeed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7825
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus Cubo,M.T., Alias-Villegas,C., Balsanelli,E., Mesa,D., de Souza,E. and Espuny,M.R. 2020 32038600 GenBank