Protein

View in Explore
Genbank accession
YP_010090874.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MATNTIAHISDDSRYKTFDPAGTSFPGNITNVQAALAALKPIAVDGIPDATTTVKGIIRISTQQEVTDGVDTTSAVTPATLAVRLQHPQATETVLGITRYSTLAETKAGTISNAAVVPSTLKGTLDEAFTVRTSSETVLGVIKLSTTPAALAGVDDTTAMTPLKTTQAINAATAKIPSPAVGNETVTGLLRLATAAETRAGTFRDGVAVSPFGLMSLRSSATEFGIVKGTSQAEVAAGAITNQYVSPQSLLGLTGNTGRLGLVKLTTTAGAGDANTALAFNADVVHLRGGQTINGSLVVGGNFNTNRIDMTSGFINGQQIMTTNMITDDVPVGCIMMWPTDNLPNGKWRFCHGGTLPSASFPTYYNTVGTTYGGDGGNAGIPDMRGLFVRGTGRSAMMAAFDGNDSKGKQGLGYGCSGAGIGQVQAQQNRVHKHESGWGEHYQRGEARNGCSVYSGQLGSNKTDWDNYKYFTNDGQEVEAANVRDSWGTMNTENLMGWENRPWNISMNYIIKVA
Physico‐chemical
properties
protein length:514 AA
molecular weight: 53814,61180 Da
isoelectric point:6,18865
aromaticity:0,06420
hydropathy:-0,18405

Domains

Domains [InterPro]
DC_0176
STR
1–440
DC_0176
SSF69349
STR
247–339
SSF69349 IPR044916
G3DSA:2.10.280.10
Unmapped
248–283
G3DSA:2.10.280.10 IPR037053 IPR027448
IPR015173
STR
256–314
IPR015173 SSF88874
IPR011083
ATT
333–389
IPR011083
YP_010090874.1
1 514
Architecture
STR
ATT
STR
STR 1-318 | ATT 319-389 | STR 390-513 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EcS1
[NCBI] 		2083276 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kagamiyamavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010090874.1 [NCBI]
Genbank nucleotide accession
NC_055721 [NCBI]
CDS location
range 94231 -> 95775
strand +
CDS
ATGGCTACTAATACTATTGCTCACATCAGTGATGATTCAAGATATAAAACATTTGACCCAGCGGGAACTAGTTTCCCTGGAAATATCACTAATGTTCAGGCAGCTTTGGCTGCCTTAAAACCTATTGCAGTTGATGGCATTCCTGATGCAACAACAACTGTAAAGGGTATTATTCGTATTTCGACTCAACAAGAAGTAACAGATGGCGTTGATACAACATCAGCTGTTACTCCTGCTACTTTAGCTGTTCGACTTCAACACCCACAAGCAACTGAAACTGTTTTAGGGATAACTCGTTATTCTACTTTAGCTGAAACAAAAGCCGGAACTATTTCTAATGCTGCTGTTGTTCCTTCAACATTAAAAGGAACATTAGATGAAGCTTTCACTGTAAGAACTTCTTCTGAAACTGTTTTAGGTGTTATTAAGCTTTCAACCACTCCGGCTGCTTTAGCTGGTGTTGATGATACTACCGCTATGACCCCTCTAAAGACCACTCAGGCTATTAATGCAGCTACTGCTAAGATACCATCACCTGCAGTAGGTAATGAAACAGTGACTGGCTTGCTACGTTTAGCGACGGCAGCAGAAACTCGTGCAGGAACATTCCGTGATGGCGTGGCTGTTTCACCATTTGGATTAATGTCCTTACGCTCATCTGCTACAGAATTTGGTATTGTTAAAGGAACATCTCAAGCTGAAGTTGCTGCAGGTGCAATTACTAACCAATACGTTTCGCCACAGTCTTTGTTAGGATTAACAGGTAATACTGGACGTCTTGGGTTAGTTAAATTAACAACTACCGCTGGTGCCGGTGATGCAAATACCGCTTTAGCCTTTAATGCTGATGTTGTTCATTTACGTGGTGGACAAACAATTAACGGTTCATTGGTTGTTGGTGGTAATTTTAATACAAACCGTATTGATATGACTTCAGGTTTTATTAATGGTCAACAAATCATGACTACCAATATGATTACGGATGACGTTCCAGTTGGTTGTATTATGATGTGGCCTACAGATAATTTGCCTAATGGTAAGTGGCGCTTCTGTCATGGTGGAACATTGCCAAGTGCTAGTTTCCCTACTTATTATAATACTGTAGGAACTACGTATGGTGGTGATGGCGGAAATGCTGGTATACCTGATATGCGAGGACTTTTTGTTCGTGGTACAGGTCGAAGTGCTATGATGGCTGCATTTGACGGTAATGATTCTAAAGGTAAACAAGGTTTAGGTTATGGATGTTCAGGTGCAGGTATTGGACAAGTCCAGGCACAACAAAACCGTGTTCATAAACATGAATCTGGATGGGGTGAACATTATCAACGTGGTGAAGCTCGTAATGGGTGTTCGGTTTATAGCGGTCAATTAGGTTCCAACAAAACTGACTGGGACAACTACAAATATTTTACCAATGATGGACAAGAAGTAGAAGCTGCTAATGTTCGAGACTCATGGGGTACGATGAATACTGAAAATCTTATGGGTTGGGAAAACCGTCCTTGGAATATATCAATGAACTATATTATCAAAGTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b45b3be3dd12f81126c8056c6abff5771e081f215108d29af6a1b7f2294e0c17
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6827
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Full genome sequencing of a novel polyvalent bacteriophage as one of T4-Family member Kawasaki,T., Saad,A.M. and Yamada,T. 2018-07-28 — GenBank