Protein

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Genbank accession
YAO59827.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSSLDLGLVRGESAFETWKKLPGNSGKNEEQFIASLKGAKGDTGAKGEPGAKGDRGEQGLPGAKGDKGEPGTPGKNGQTPRISMRIDERGHLMADISYE
Physico‐chemical
properties
protein length:99 AA
molecular weight: 10356,40310 Da
isoelectric point:6,59846
aromaticity:0,04040
hydropathy:-0,94242

Domains

Domains [InterPro]
DC_0663
STR
3–95
DC_0663
IPR008160
STR
37–78
IPR008160
YAO59827.1
1 99
Architecture
STR
STR 3-95 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage PhiCP17-i
[NCBI] 		3454120 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens type A
[NCBI] 		37763 Bacillota > Clostridia > Eubacteriales > Clostridiaceae > Clostridium > Clostridium perfringens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAO59827.1 [NCBI]
Genbank nucleotide accession
PV983592.1 [NCBI]
CDS location
range 8766 -> 9065
strand +
CDS
ATGTCATCTTTAGATTTAGGATTAGTAAGAGGAGAAAGTGCTTTCGAGACATGGAAGAAGTTACCTGGTAATAGCGGTAAAAATGAAGAACAATTTATTGCAAGTTTAAAAGGTGCAAAAGGAGATACAGGCGCAAAGGGAGAACCTGGCGCAAAAGGAGACAGAGGAGAACAGGGACTACCTGGAGCAAAAGGGGACAAGGGAGAACCTGGGACACCTGGTAAAAACGGACAAACACCAAGAATATCCATGAGAATAGATGAAAGAGGTCATTTAATGGCGGATATCTCATATGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa9f21bd3d91849ba94079fba709e9fc05bd8f882b71e5a2dc9d54de09d4bfe6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7707
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and Physiochemical characterization of two Lysogenic bacteriophages PhiCP5-17 and PhiCP17-i against Clostridium perfringens Nasim,H., Haider,Z., Mannan,S. and Rehman,S.U. 2018-02-06 — GenBank