Protein

View in Explore
Genbank accession
YBB95618.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MDGSSWTSIGIMAGPQGKPGEGLNIKGVLTDVSQLPKKDTNPELTTGDSYWVETDNGPMLYTYQGQEIDGYIGPIDLNGEQGIQGVEGPQGPEGKQGGGLLIIYVGDDAGKPAASADNVGKGIAIHTNTEGQVEVFVCIDTEGTFTWESLGVLAMGPEGPQGPEGKQGVPGIPGKTGQKGERGSSWVILPEGQTAPTSIDGNRGDWCIDKTGTVWYKDANWVVFYKLMSVPVSEVDPEDVDKKMVRYKLGWTELPVDEVPNAEVGVFYGRHKATADGAIEWTAIELPTPAIDAVPNPTVNAQYVRKGIAGGKTEWATITFPEIPSDVVRDTAQATKPQGRVAGNWVDVAPLQTDDTLMGMQNGEWVAVPAAVIGEVPSEGANGTNYVREKTASGSKWTPVTIIVDQADATSGQLFLRNAAAKSWTLFQGPNNDVTADGDWVRSRTGTNITWKKLDKSFDAYSLKSSTFTGTALTLTPANQQCYRVQTAANQTITLENGPVDRMVTAVLVLLGKVAMPTLSSAVLQWNNGTPLIVDDLGDTKTILTLLWDGTNWVVSKGAVI
Physico‐chemical
properties
protein length:561 AA
molecular weight: 59740,28270 Da
isoelectric point:4,54947
aromaticity:0,07308
hydropathy:-0,27950

Domains

Domains [InterPro]
DC_1065
STR
2–144
DC_1065 DC_0449
DC_0309
STR
104–368
DC_0309
YBB95618.1
1 561
Architecture
STR
RBD
STR 2-368 | RBD 369-561
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeC_EG2
[NCBI] 		3455811 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YBB95618.1 [NCBI]
Genbank nucleotide accession
PV985319.1 [NCBI]
CDS location
range 159682 -> 161367
strand +
CDS
ATGGACGGCAGTAGCTGGACTAGTATTGGTATCATGGCAGGTCCGCAAGGTAAGCCGGGTGAAGGTTTAAACATTAAAGGTGTTCTAACCGACGTATCCCAATTACCTAAGAAGGATACTAACCCTGAATTAACTACTGGTGATTCGTATTGGGTTGAGACCGACAATGGTCCGATGCTTTATACTTACCAAGGTCAAGAGATTGATGGCTATATCGGCCCAATTGACTTAAATGGTGAACAAGGTATTCAGGGTGTTGAAGGTCCTCAGGGTCCTGAAGGTAAACAAGGTGGTGGGCTATTAATTATTTACGTTGGTGATGATGCTGGTAAACCAGCTGCATCTGCTGATAACGTAGGTAAAGGTATTGCCATTCACACCAACACTGAAGGACAAGTAGAAGTATTTGTATGTATTGATACAGAAGGTACATTTACTTGGGAAAGCCTAGGTGTCCTAGCTATGGGTCCGGAAGGCCCACAAGGCCCTGAAGGTAAACAAGGTGTTCCAGGTATACCTGGTAAAACCGGTCAGAAAGGTGAGCGTGGATCCTCTTGGGTAATTCTACCTGAAGGTCAAACTGCACCCACCTCTATCGATGGTAACCGTGGCGACTGGTGTATCGACAAAACTGGCACTGTCTGGTATAAAGATGCTAACTGGGTTGTATTCTACAAACTAATGTCAGTTCCAGTTAGTGAAGTTGATCCAGAAGATGTCGATAAGAAAATGGTTCGGTACAAACTCGGTTGGACTGAACTACCTGTTGATGAAGTACCAAACGCCGAGGTTGGTGTTTTCTATGGTCGTCATAAAGCAACAGCTGATGGTGCTATTGAATGGACGGCTATTGAACTACCGACACCTGCTATTGATGCTGTACCTAATCCAACTGTCAATGCACAATACGTTCGTAAAGGTATTGCAGGTGGTAAAACTGAATGGGCTACCATTACATTCCCAGAAATTCCTTCAGATGTAGTACGCGATACTGCACAAGCTACTAAGCCTCAAGGTCGTGTAGCTGGTAACTGGGTTGATGTAGCACCTCTGCAAACCGATGATACTCTAATGGGTATGCAAAATGGTGAATGGGTAGCTGTACCAGCCGCAGTTATTGGCGAAGTACCTAGTGAAGGCGCTAATGGCACTAACTATGTACGTGAGAAAACAGCTAGTGGTTCTAAATGGACACCTGTAACTATTATAGTTGATCAAGCTGATGCTACTAGTGGACAACTATTCCTACGTAACGCTGCGGCTAAATCATGGACTCTATTCCAAGGTCCGAATAATGATGTAACCGCTGATGGTGATTGGGTACGTAGCCGTACTGGTACTAATATTACTTGGAAGAAGCTAGATAAATCATTCGATGCATATAGTCTGAAATCAAGTACATTCACTGGTACAGCTTTAACTCTAACACCAGCTAACCAACAGTGCTATAGGGTTCAAACTGCTGCTAACCAAACCATTACACTAGAGAATGGACCTGTTGATCGTATGGTAACGGCTGTTCTTGTACTACTTGGTAAGGTAGCTATGCCAACACTATCTAGTGCAGTGCTACAGTGGAACAATGGTACTCCATTAATAGTAGATGACCTAGGCGATACTAAAACAATTCTTACTCTCCTATGGGACGGTACTAATTGGGTAGTTTCCAAAGGTGCTGTTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aa34b147a1dd257fc3bab9f3e86d14ca6155b4567add45a969058c83ca8b42de
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5173
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Characterization of Lytic Bacteriophages Targeting Pseudomonas aeruginosa Ismail,G.H., Elariny,E.Y.T., Abdel-Haliem,M.E.F., Sobhy,N.M., Youssef,C.R.B. and Tartor,Y.H. — — GenBank