Protein

View in Explore
Genbank accession
XKC22355.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYKLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQLAGSTMIGDLGIVKLLYGGKAVFDPTGSSEITIGDVLKTFKINANGLKLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNNFNIRQAIIIDGEQLTLKKATNAGASYIQGRDANNQQTWYVGQGKENNTNVYLYNHATGSMLTIDATASFNKTLRITGQVQPSDWSNIDSRYIPAATLSTIARTNAQNTFNGVQKVVTDDEALIVKNYTQNRPLYIRGVDTANVSRWRVGVGWVGTNDVVLDNSFSGTQLVLGNLSASINKTLTLAGQIQPSDFSNLDARYFTQTVANQRFAQLAANNTFTGANTFTNLVVKENANAITLQNTDAGTALYILCKKSDGTNKWHVGTDSDETRLNIYNYLTGSQVSLGTTVGINKTVQINGQVKPSDFSNLDARYFTQSASDSRYLRIRSTNFNNGNDDKWAKIATVVMPPTASTAVIEVFGGSGYNYGFPYQASKTEIVLRAGGNSPKGLNIVAWKNSENLIITDIGYVNTSGDTYDIYCRVGPFQNDTTSRVQSSSNASVQLFEAPQTFDDAPQGIVKGTIARYYTSMQKPTPSDIGAYTKAETDHKIAQAVSDSTDLNKIYPVGIVTWFNSNVNPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKTTNTTGAHTHQFGGYINSFYGDSSHTSFQPGGGAWTQAAGDHSHSVGIGAHSHTVSGNTGSTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:812 AA
molecular weight: 87928,34040 Da
isoelectric point:8,13941
aromaticity:0,09113
hydropathy:-0,36786

Domains

Domains [InterPro]
DC_0032
ATT
1–249
DC_0032 G3DSA:6.20.80.10 G3DSA:6.20.80.10 SSF88874
G3DSA:6.20.80.10
STR
157–218
G3DSA:6.20.80.10 DC_0348
IPR048388
ATT
158–241
IPR048388 IPR048388 IPR048388 IPR005003 IPR005003 IPR005003
XKC22355.1
1 812
Architecture
ATT
RBD
ATT
RBD
ATT
RBD
STR
RBD
ATT 1-249 | RBD 250-265 | ATT 266-356 | RBD 357-380 | ATT 381-465 | RBD 466-643 | STR 644-784 | RBD 785-812
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC22355.1
1 812
Domain Start End Length (AA) Confidence
N-terminal 1 264 264 0,7175
Central domain 265 463 200 0,2194
C-terminal 464 812 348 0,8986
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-264
Central
265-463
C-terminal
464-812

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage HMD-P8
[NCBI] 		3378324 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC22355.1 [NCBI]
Genbank nucleotide accession
PQ568382.1 [NCBI]
CDS location
range 24558 -> 26996
strand +
CDS
ATGGCAGATTACAAGTTGAGTGAATTAAACTCAATCGACACAATCCGTTCAGACGACCTTCTTCATGTCAGAGTTAAAAAGAGACCTGAAATGCTGGGTGATGAAGACCGTAGAATGACCTATCAAGATTTCTTAGCTTCCTTCAAACTAGAAAGGTTTGTTCAGCTTGCTGGGAGTACTATGATTGGGGATTTAGGTATTGTCAAGTTACTTTACGGTGGCAAGGCTGTATTTGACCCAACAGGTTCTTCTGAGATTACTATTGGGGATGTTTTAAAGACTTTTAAAATTAACGCAAATGGTCTTAAACTAACTATTGCAGATGCTTCAAGGTCAGCAACTGTTTATCATACTTTGAATAAACCAAGCCCTAATGAACTTGGTATGAGAACTAATGAAGAGAATGATGCAAGATACGCAAGACTTGCTGTTACAAATAACTTCAACATTAGGCAAGCAATTATCATTGATGGTGAGCAGTTAACCCTTAAGAAAGCAACTAATGCAGGAGCTTCATATATTCAGGGTAGAGATGCTAATAACCAGCAAACGTGGTATGTTGGACAGGGAAAGGAAAACAATACTAATGTTTATCTGTACAATCATGCCACTGGCTCAATGTTAACCATTGACGCAACAGCGTCATTTAACAAGACACTAAGAATCACTGGTCAAGTTCAACCTTCTGACTGGTCTAACATTGATTCTAGATATATTCCGGCAGCAACATTAAGTACAATTGCAAGAACTAATGCACAAAATACTTTTAATGGTGTACAGAAAGTTGTTACTGATGATGAAGCCCTAATTGTGAAAAACTATACTCAGAACAGACCATTGTATATCCGTGGTGTGGACACTGCTAATGTGTCAAGGTGGCGGGTAGGTGTTGGTTGGGTAGGTACTAATGATGTAGTCCTAGATAACAGTTTTTCTGGCACTCAGTTAGTTTTAGGTAACTTATCTGCAAGTATCAATAAGACATTAACCCTAGCAGGGCAGATTCAACCCTCAGATTTCTCTAACTTAGATGCTAGATACTTCACTCAGACAGTTGCTAATCAGAGATTTGCACAGTTAGCTGCTAATAACACTTTTACAGGTGCTAATACTTTCACTAACCTTGTTGTTAAGGAGAATGCTAATGCTATTACTTTGCAGAATACTGATGCAGGTACAGCACTTTATATTCTCTGTAAGAAGTCTGATGGAACAAATAAATGGCATGTTGGTACAGATTCTGATGAGACACGTCTGAACATTTATAACTACCTTACAGGTTCACAGGTTTCACTAGGCACTACTGTTGGTATTAATAAAACCGTGCAAATCAATGGTCAAGTTAAACCTTCAGATTTCTCTAACTTAGATGCTAGATACTTTACTCAAAGTGCTAGTGATAGTAGATACCTGAGAATCAGAAGTACTAACTTCAATAATGGAAACGATGACAAGTGGGCTAAAATTGCTACTGTTGTAATGCCGCCTACCGCATCTACTGCGGTGATTGAAGTGTTTGGTGGGTCAGGTTATAACTATGGTTTCCCTTACCAAGCTAGTAAAACGGAAATTGTTCTCAGAGCAGGGGGTAATAGCCCAAAAGGTTTAAATATTGTTGCTTGGAAAAACTCGGAGAATCTCATTATTACGGATATCGGTTATGTTAATACATCTGGTGATACTTATGACATTTACTGTAGAGTTGGTCCATTCCAAAATGACACAACATCAAGAGTTCAATCTTCTAGCAATGCAAGTGTGCAATTGTTTGAAGCCCCACAAACATTTGATGATGCTCCACAAGGTATTGTAAAGGGTACAATTGCAAGATACTACACAAGTATGCAAAAACCAACCCCTTCAGATATCGGTGCATACACTAAAGCTGAAACTGACCATAAGATTGCACAGGCAGTAAGTGATTCAACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAACAGTAATGTTAACCCTAATACCGCACTTCCTGGATTAACTTGGACGTACCTGAACAATGGTGTTGGTAGAACTATCAGGATTGCAGCAGCGAATGGTTCAGATGTTGCTACAACTGGAGGTTCAGATTCTGTTACATTAGCAGTTGGAAACTTGCCTTCACACACTCATAGTTTCTCTGCGACAACCTCTAGCTTTGACTACGGTACTAAAACCACTAACACTACTGGTGCTCATACTCACCAGTTCGGCGGTTATATCAACTCGTTCTATGGAGACTCCAGTCACACCTCATTTCAGCCTGGAGGTGGTGCGTGGACACAGGCCGCTGGCGACCATTCCCACTCTGTAGGTATTGGTGCTCACAGCCACACAGTTAGTGGTAACACTGGTAGTACAGGCTCTGGTTCGGCATTTAGTGTTACTAACCAGTTCTACAAGTTAATGGCTTGGGTGAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8fb2376e897df4dfd20e4f271cfbf127b3982fd951c2caffaa0087845afe6f44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7041
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50