Protein

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Genbank accession
YP_009785944.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MKAGGTYPDILQGVSQKPAHRRRPGNTHEQVNVLSDPVNGLVRRRGTRFAALQSVSVTPDELRNMDVFDFTQDGKEYALLYRRDASTAGKETFAFLYSKTDEAFIPLVYENSAWVNELVAGGASSLAAIGSYVYIAGNTTIPEATSTNVWQTPTNLNRLAAWIRTGKYNTVYTVNLKREDGTVLTVTFKTVTASYPGTLDTSDIPFYESGGTTPDPAYQKHVNDRVNEYNSNVNEWIVTSAEQTRPEYIAEKLSDLLVDAGVNSTYLKGGILIDDDQFVDITVDDEGDGTTFYASGQEIADATYSVQFHFHGKVVRVRPSGAGSDETYYLRAELESGDPSDGFGAVDWYETAGVECTIDNFVSQLYIYKGVGYIARNGDGITSLAVGSGEHPAYGERAVGDGLTSPIPWFVGKAVTMLSVFQDRLIVGAGNYVNASKSGNYLSFWRASAVNIADDDPIEIFAHGSEGDVLRHATLYNGNLVIFGDRQQYGISGDSVFSPKNPLIKAFSANKDAVDAKAQTSGNYIFYAQYGSEGTSMHQMRVGALNGQQTVTDEMSNELGTWLNGRPLQITALTAPNLVMFRTREHPQDFYLYRYEDNKNNGQRVVESWSRFQYATGLGFVIGISSYKKTGLVFTARGGAVVADVFDPKAEADTHSCLDSWASFGTHTGVSTSALSAVATANSGYFLVGAPYSQLPDLVSQLGITTEQLEVGVPSEAWVIPTNPFPRDRNGEAVLDGRMALNRVSVDVENTAGMLGIVKATTGTITTTDFEGRILGTTSNLIGQQPVYSGQLNISVGREVRECTYEIRSKTWLPLRVTGLSWTGQTFNNVRRVS
Physico‐chemical
properties
protein length:834 AA
molecular weight: 90888,80660 Da
isoelectric point:5,00896
aromaticity:0,10312
hydropathy:-0,28082

Domains

Domains [InterPro]
DC_0058
STR
1–834
DC_0058
IPR058003
TTP
6–628
IPR058003 IPR058003
YP_009785944.1
1 834
Architecture
STR
STR 1-834
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785944.1
1 834
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,8775
Central domain 187 393 208 0,3300
C-terminal 394 834 440 0,2537
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-393
C-terminal
394-834

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XAJ24
[NCBI] 		1775250 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785944.1 [NCBI]
Genbank nucleotide accession
NC_047762 [NCBI]
CDS location
range 24730 -> 27234
strand +
CDS
ATGAAGGCAGGCGGAACCTATCCCGACATCCTACAAGGTGTCAGTCAGAAACCGGCTCATCGTCGGAGACCGGGCAACACGCACGAGCAAGTCAATGTGCTGAGCGATCCGGTCAACGGTCTTGTACGCCGTCGCGGTACGCGCTTCGCTGCCCTGCAATCCGTGAGCGTCACTCCCGATGAGCTGCGGAACATGGACGTGTTCGACTTTACCCAAGATGGGAAGGAGTATGCGCTTCTGTATCGGCGCGATGCCTCGACCGCAGGTAAGGAGACATTCGCATTCCTCTACAGCAAGACTGACGAGGCGTTCATTCCGCTGGTCTACGAGAACAGCGCTTGGGTTAACGAGCTGGTAGCAGGCGGTGCATCCTCGCTCGCCGCTATCGGAAGCTACGTGTACATCGCAGGCAACACCACAATCCCCGAGGCAACAAGCACGAACGTATGGCAGACGCCGACGAACTTGAATCGCCTCGCTGCGTGGATTCGTACTGGCAAGTACAACACCGTCTACACCGTGAACCTCAAGCGGGAAGATGGTACGGTGCTGACGGTTACGTTCAAGACGGTGACGGCATCGTACCCCGGGACTTTGGACACCAGCGATATTCCGTTCTATGAGTCCGGAGGTACGACTCCCGATCCTGCTTACCAGAAGCACGTCAATGACCGAGTGAACGAATACAACAGCAACGTCAACGAGTGGATCGTGACGAGCGCCGAACAGACACGCCCGGAGTACATCGCCGAAAAGCTGTCGGACTTGTTGGTGGATGCCGGGGTTAACTCCACGTACTTGAAGGGTGGCATCCTCATTGACGACGACCAGTTCGTGGACATCACGGTTGACGACGAAGGCGACGGCACCACGTTCTATGCAAGCGGTCAGGAGATTGCCGACGCCACCTACTCCGTGCAGTTCCACTTCCACGGTAAGGTTGTTCGCGTACGGCCCAGCGGTGCAGGGTCGGACGAGACCTACTACCTCCGCGCCGAGCTGGAATCCGGCGACCCGTCCGATGGCTTCGGTGCAGTGGATTGGTACGAGACAGCGGGTGTGGAGTGCACCATCGACAACTTCGTGTCGCAGCTGTACATCTACAAAGGCGTTGGCTATATCGCACGCAATGGTGACGGCATCACGTCGTTGGCCGTTGGTAGTGGTGAGCATCCCGCATATGGTGAGCGCGCGGTAGGGGACGGCCTTACCTCCCCAATCCCGTGGTTCGTCGGAAAAGCGGTGACCATGCTGTCGGTGTTCCAAGACCGTCTGATCGTGGGTGCAGGGAACTACGTCAATGCAAGCAAGTCTGGAAACTACCTGAGCTTCTGGCGGGCGTCGGCGGTGAATATCGCAGATGACGACCCCATCGAAATCTTCGCTCACGGTAGTGAGGGTGATGTGCTGCGCCATGCCACACTCTACAACGGCAACCTCGTGATCTTTGGCGACCGACAGCAGTACGGCATCAGCGGAGACTCAGTGTTCAGTCCGAAGAACCCGCTCATCAAAGCTTTCAGCGCGAACAAGGATGCGGTGGATGCCAAGGCACAGACCTCAGGCAACTACATCTTCTACGCACAGTACGGTAGCGAGGGTACGTCCATGCACCAGATGCGAGTCGGTGCGTTGAATGGGCAGCAGACTGTGACCGATGAGATGTCGAATGAGCTGGGTACTTGGCTCAATGGCAGACCATTGCAGATCACGGCACTCACCGCCCCGAACCTTGTGATGTTCCGTACGCGCGAGCATCCGCAGGACTTCTACCTCTACCGCTACGAAGACAACAAGAACAACGGTCAGCGTGTTGTGGAGAGCTGGTCCCGGTTCCAGTACGCTACGGGGCTGGGGTTTGTAATCGGCATCAGCTCTTACAAGAAGACTGGTCTAGTGTTCACTGCACGCGGTGGGGCTGTTGTCGCGGACGTGTTTGATCCGAAGGCCGAGGCTGACACGCACTCGTGCCTGGACAGCTGGGCGAGTTTCGGTACACATACAGGCGTGAGCACTTCCGCACTTAGTGCCGTGGCTACTGCGAACAGCGGGTACTTCCTCGTCGGCGCGCCGTACTCACAGCTGCCTGACCTCGTGTCGCAGCTCGGCATTACGACTGAGCAGCTGGAAGTGGGTGTACCGTCGGAGGCGTGGGTCATCCCCACCAATCCGTTCCCACGTGATCGCAATGGTGAGGCTGTACTCGACGGGCGCATGGCGCTCAACCGTGTGTCTGTGGATGTGGAGAATACGGCGGGCATGTTGGGAATCGTCAAGGCCACCACTGGCACGATCACCACGACCGACTTCGAGGGTCGCATCCTCGGCACAACCAGTAACTTGATCGGGCAGCAACCGGTGTACTCCGGGCAGCTCAACATCAGTGTTGGTCGTGAAGTACGTGAGTGCACATACGAGATTCGCAGCAAGACTTGGCTACCCCTTCGGGTGACTGGTCTGAGCTGGACGGGTCAAACTTTCAACAACGTACGGAGGGTTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a051189abe41864455503c3bec27f0072badb07701931d0e5763fde0f7ac5328
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8260
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages of Xanthomonas arboricola pv. juglandis: Characterization of two phages Domotor,D., Frank,T., Rakhely,G., Doffkay,Z., Schneider,G. and Kovacs,T. 2018-01-02 — GenBank