Protein

View in Explore
Genbank accession
YP_010113472.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDIKSNTQLINTFAGGMNTDLSDMLLKSSQYRLAKNVRYVTNDEENGGELRMVDGCVFGGDVSDGFIIDDEYKNRLKVLYTGAIRNYAIAIVKIEVNDGERINVIDPHNTSKELTNSHWWVLVSKNPFENVDNDTYIQMDKFKVAFGPCGATLGNKLSVVCRYENYNNVHVYIADGINPVLSINIGHAFDDGFVPSSDYNAITSNPQVTFKRIQFVDLVDGALPAGMVEYSYQYFNKYGNESKISVPTKLIPIVKGSGNYAEGYRSGETSNRGVELRFPGKHESFDSMRIYRIQYIENGQAPTVDVIYESNVNTTDFWTYIDGGQPPLYNVTLEEYNANSGIHIIPKVIESKEDRLFAANIKKDLNSFVSQDILNWDARAYRFPKDSTTTTLYTYGTTSNPITVDNTYLVPKKHDCWQSTNNINKDLTEDDPQYQYNSSVVGGSGKNISWSFNDIKTSADANISDSDYYSIPGTNGKPLSLQDDRSLYVLNYTKFDDGNHLMGTDIKASLANSKTSYTYPSLKADELYRYGIVLYDKYGNASPVKWIADIRTPIELPIYTNEFSDLTTSQRGLFFDVNEQSLINVGVTSYEIVRCIRSEKDIKNLSIGVLSRPIKKLTNKYNLRNSLATASYPYTPSGWLTTADYWAGSNRQFDFKDYTDEYEGHWWAESNCAIRHVDHDDNTTHTTYSEPNKSIFLFVSPEVCYSQDSFKQLLQGQSIKIKPLTYLYGYKLRKNDLDFDHNSSFLIFYPAENSTSSGVFLDLVLYPGNDYTRMYVENTAVVYSEFPGEYIDLSINSAENLDLRDIITNASSVATLFYYGNKKLSDCITGEGDKNYVVNGKTYKMCYTPSGYENNGVGFNQLDTDKRYSYIKLYIASDNIIVSQFTKGNRKIIENKSVSSIGSSEVDDFAFADTLLWDDFAEIKKSGETYSLKYTNTSTAIGNNSFVNWVSNGAYNVPATGDWSTLKLDQANLQDDMLLQTNVVMGPGGACMLLNIKDADVALWNSAAVPNNLFKDTTSYMYSCSVLNGAIVGGGRKIYVVPESRLGTFLCSIQHTITPYSGFSYENRKQDIYYSFGDLFVPTEVGTSQTHLNLPEGWYRRPVFNGDCYRQAMEYVSQHKYYFAPNKYTKNACVVYSFPTESSINLAFTDGFEFHKNNAPTEIQEKPADVYKKFVLTKSLYRYNPVYSAHSTAHPKAMQLDRSDYDIEFDTRCFYSNVKSNNENTDNWLHFMPANFIDVDSRKGPITNLRTFNNQLFFWQTDGTGILSVNERAAVSDQSGLPLMLGTGGVLERFDYLNTACGMKENEFADAQSDSVLYWWDHTRKELCAHAAGNGLGVNSLSKEKGVQNLINVKAKQNLLASDPTLIYDKKYNELIAYIATTAEDDTTKDGTPSEKITATDDGSMIYSELTGQFVSLVDVYPKHAILFGDKIYMMSDKDANDKYLWLWNYQECKKNPDVSYVRGFSNMLYPYVKYVINDNNTFPKVFDNITFGGRFYGGDKEDITPLRFKFKTPLKQQGDADGTSVENREYDFRMAIPRHKNSQYGDRLRGKTMQCEMWSLKSDVDFSLQYITTKYRISWV
Physico‐chemical
properties
protein length:1581 AA
molecular weight: 179219,83120 Da
isoelectric point:5,22910
aromaticity:0,12840
hydropathy:-0,48830

Domains

Domains [InterPro]
IPR057889
STR
8–1438
IPR057889
DC_1659
RBD
1420–1581
DC_1659
YP_010113472.1
1 1581
Architecture
STR
RBD
STR 8-1438 | RBD 1439-1581
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010113472.1
1 1581
Domain Start End Length (AA) Confidence
N-terminal 1 21 21 0,3089
Central domain 22 220 200 0,7582
C-terminal 221 1581 1360 0,3304
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-21
Central
22-220
C-terminal
221-1581

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr272_1
[NCBI] 		2772094 Uroviricota > Caudoviricetes > Crassvirales > Oafivirinae > Buhlduvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010113472.1 [NCBI]
Genbank nucleotide accession
NC_055903 [NCBI]
CDS location
range 45145 -> 49890
strand +
CDS
ATGGATATTAAATCAAATACACAATAGATAAATACATTCGCTGGCGGTATGAATACTGACTTGTCAGACATGCTTTTAAAGTCGTCTCAGTATAGATTGGCTAAAAACGTACGTTATGTCACAAATGACGAGGAGAACGGCGGAGAATTACGAATGGTCGATGGTTGTGTGTTTGGTGGAGATGTATCTGATGGTTTCATTATAGATGATGAATATAAAAACCGGTTAAAAGTACTTTATACAGGGGCTATTAGAAACTACGCAATAGCTATAGTTAAAATAGAAGTTAATGACGGAGAAAGAATTAATGTTATAGACCCACACAACACAAGTAAAGAACTTACAAACTCTCATTGGTGGGTATTGGTTTCAAAAAATCCGTTTGAAAACGTAGACAACGACACCTATATACAAATGGATAAATTTAAGGTTGCGTTTGGCCCTTGTGGAGCAACTCTTGGAAATAAATTAAGTGTTGTATGTAGATACGAGAACTATAATAACGTTCACGTTTATATTGCGGACGGAATAAATCCAGTACTATCTATAAACATAGGACATGCGTTCGACGATGGATTTGTGCCAAGCAGTGATTATAACGCAATAACATCGAACCCGCAAGTAACATTTAAACGTATACAATTTGTTGATCTTGTAGACGGTGCTTTACCAGCAGGAATGGTTGAATACAGTTATCAGTACTTTAATAAGTACGGAAACGAATCTAAGATTTCAGTACCAACAAAGCTGATACCAATTGTAAAAGGATCTGGTAATTATGCAGAAGGATATAGATCTGGAGAAACATCTAATCGTGGTGTAGAACTCCGGTTTCCAGGAAAACACGAATCGTTTGATTCTATGCGTATATATCGTATACAGTACATAGAAAACGGGCAAGCTCCTACGGTTGATGTTATATACGAATCAAATGTCAACACAACAGATTTCTGGACATATATAGATGGTGGACAACCACCTCTGTATAATGTAACTTTAGAAGAGTATAACGCCAACAGCGGAATACACATTATACCAAAAGTAATAGAATCCAAAGAAGATCGCTTATTTGCAGCAAATATTAAGAAAGACTTAAACTCATTCGTTTCTCAAGATATTTTAAACTGGGATGCTAGAGCATATAGATTTCCAAAAGACAGTACAACAACCACACTGTATACTTATGGTACAACAAGTAATCCTATTACTGTAGACAACACGTATTAGGTGCCAAAGAAACACGACTGTTGGCAATCTACAAACAACATAAATAAAGACCTTACTGAAGACGACCCGCAATATCAATATAACAGTAGTGTTGTTGGAGGAAGCGGAAAGAATATATCATGGTCTTTTAATGACATTAAAACATCTGCTGACGCAAATATTAGTGATAGTGATTATTATAGTATTCCTGGCACAAATGGAAAACCATTATCTTTACAGGATGATAGAAGTTTGTATGTGTTAAATTACACAAAATTTGACGATGGAAATCATCTTATGGGAACTGATATTAAAGCTTCCTTAGCCAACTCAAAAACATCATACACATATCCATCGTTAAAAGCTGATGAATTATATAGATATGGTATTGTACTTTATGATAAATACGGAAACGCAAGCCCCGTAAAATGGATTGCCGATATAAGAACTCCAATAGAGTTACCAATATATACGAACGAATTTTCTGATTTAACAACGTCACAGCGTGGATTATTTTTTGATGTTAATGAACAATCTTTAATAAATGTCGGTGTAACGTCTTACGAGATAGTTAGATGTATAAGATCAGAAAAAGACATAAAGAATTTGTCTATTGGAGTATTGTCTAGACCAATAAAAAAACTTACTAACAAATATAATTTGCGCAATTCATAGGCAACAGCATCTTATCCATATACACCAAGCGGATGGCTTACTACAGCAGATTATTGGGCAGGATCTAATAGACAATTTGACTTTAAAGATTATACTGATGAATATGAAGGGCATTGGTGGGCAGAATCAAACTGTGCAATACGTCACGTTGATCATGACGATAATACAACGCATACTACATATAGCGAACCTAACAAATCTATATTTTAGTTTGTATCCCCAGAGGTTTGTTATTCACAAGATTCTTTTAAGCAACTTTTACAAGGACAATCTATAAAAATTAAGCCGCTTACATATTTATATGGATATAAGTAGAGAAAAAACGATTAGGATTTTGACCATAATTCTTCATTTTTAATATTTTATCCAGCTGAAAACAGTACGTCTAGTGGAGTATTTTTAGACTAGGTGTTATATCCAGGAAACGATTACACCAGAATGTACGTAGAAAATACAGCTGTTGTATACAGTGAATTTCCTGGTGAGTATATTGACTTGTCTATAAATTCCGCAGAAAATTTAGATTAGCGAGATATTATAACAAATGCATCATCTGTAGCAACGCTGTTTTATTATGGAAATAAGAAATTATCAGACTGTATTACTGGTGAAGGAGATAAAAATTATGTTGTAAACGGAAAAACGTATAAAATGTGCTATACTCCGTCTGGATATGAAAACAACGGAGTTGGTTTTAATCAGCTTGATACAGACAAAAGATATTCGTATATAAAGTTATATATAGCATCTGACAATATTATTGTTTCTCAATTTACTAAAGGTAATAGAAAAATAATTGAAAATAAATCAGTATCTTCTATAGGTTCTTCTGAAGTTGATGATTTTGCGTTTGCAGACACGCTCTAGTGGGATGATTTTGCGGAGATAAAAAAATCCGGAGAAACATATTCTTTAAAATATACAAATACATCTACTGCTATAGGAAACAATTCGTTTGTAAACTGGGTGTCTAATGGAGCATACAATGTACCAGCTACTGGAGATTGGTCAACGCTTAAACTAGACCAGGCAAATTTACAAGACGACATGCTTCTGCAAACAAATGTTGTCATGGGCCCAGGTGGTGCTTGTATGTTATTAAACATAAAAGATGCAGATGTTGCATTATGGAATTCTGCTGCTGTTCCAAACAATTAGTTTAAGGATACTACAAGTTATATGTATTCTTGTAGTGTTCTTAATGGAGCTATAGTCGGTGGTGGTAGAAAAATATATGTTGTACCAGAAAGCAGACTTGGTACATTTTTGTGTAGTATACAACATACAATAACACCGTATAGCGGATTCTCATACGAAAACAGAAAACAGGATATATATTATAGCTTTGGAGATTTATTTGTTCCTACAGAAGTTGGAACTTCACAAACACACCTTAATCTCCCAGAAGGATGGTATAGACGTCCTGTATTCAACGGCGACTGTTACAGACAAGCAATGGAATATGTATCACAGCACAAATATTATTTTGCACCAAATAAGTATACAAAGAATGCTTGTGTTGTATATTCGTTCCCAACAGAATCGTCTATAAACCTTGCATTTACTGATGGATTTGAATTCCATAAAAACAACGCTCCAACAGAGATACAAGAAAAACCAGCAGATGTATACAAGAAGTTTGTTTAGACAAAGTCTTTATATAGATACAACCCAGTATATAGCGCACACAGTACAGCTCATCCAAAAGCAATGCAGCTTGATAGAAGCGATTACGATATAGAATTTGATACAAGATGTTTCTACTCTAACGTAAAGAGTAATAACGAAAATACTGATAATTGGTTGCATTTTATGCCAGCAAACTTTATCGACGTTGATAGTAGAAAAGGCCCAATAACGAACCTAAGAACATTTAATAACCAGCTGTTCTTTTGGCAAACAGACGGTACCGGAATATTATCCGTAAACGAGAGAGCTGCTGTTTCCGATCAATCTGGACTTCCATTGATGCTTGGTACAGGCGGAGTATTAGAGAGATTTGATTACCTTAATACTGCTTGTGGCATGAAAGAAAACGAATTTGCAGATGCTCAATCTGATTCTGTACTATATTGGTGGGATCATACAAGAAAAGAACTTTGTGCACATGCTGCAGGAAATGGTCTTGGCGTAAATTCTCTATCAAAAGAAAAAGGAGTACAGAATTTGATAAACGTTAAGGCTAAACAAAACCTATTGGCATCAGATCCAACTCTGATATACGATAAGAAGTATAATGAGCTTATTGCCTATATAGCAACAACAGCAGAAGATGATACTACTAAAGATGGCACACCATCTGAAAAAATTACAGCTACAGACGACGGTTCTATGATATATAGTGAACTTACTGGACAGTTTGTTTCTTTAGTAGATGTATATCCAAAACACGCAATATAGTTTGGAGATAAAATATATATGATGTCTGACAAGGATGCAAACGACAAATACTTGTGGTTATGGAACTATCAAGAGTGCAAGAAAAACCCTGATGTTTCGTATGTAAGAGGATTTTCTAATATGCTTTATCCGTACGTAAAGTACGTCATAAACGACAATAATACATTCCCAAAAGTATTTGATAATATTACATTCGGCGGAAGATTTTATGGTGGTGACAAAGAAGATATTACTCCGTTACGTTTCAAGTTTAAGACACCGCTAAAACAACAAGGTGATGCTGATGGAACTTCTGTAGAGAATAGAGAATACGACTTTAGAATGGCTATTCCTCGTCATAAAAATTCGCAGTATGGAGATAGATTAAGAGGAAAAACAATGCAGTGTGAGATGTGGTCTTTAAAATCTGACGTAGACTTTTCATTGCAATATATAACAACTAAATATAGAATATCTTGGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cdbf4f467414ec74e95a205a938d6ba88e71bb108f5f0da4bced3f92581ddc95
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5599
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank