Protein

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Genbank accession
QBQ72446.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,63
Protein sequence
MSKARELADFVAAGNPLADGSITFDEIADGNLTITSGTIKLDGNYPTGSDNVALGNTALDALTSGSRNTAIGSASLTANTSGQNNVSLGFNSMLANTSGSDTVAVGVGALDSNTTGSNNVALGRSALQANTTASHSTAVGYQAMYSNTSGYGTAVGAYSLDASTTGTHNTAVGSSSLSANTSGSYNSALGHHALASSTTASNNVAVGYQAGYSNTTGTINEAIGYRALHTNSTGSYNTALGGDALHNNTTASYNVGMGYRSLFANTTGANNTALGYNALLNNTTASYNTAVGYQSGYSNTTGQNHAFFGYKAGNSNTTGTANAFLGDQSGRNTTTGSYNSASGPAALYSNTSGSYNTAMGGNSLFSNTTASYNTAVGYQAGFSSTAGNQVFVGRGAGYSMTSNNANTMVGDIAGNKTTGGQNTFFGQQAGYWVTSGAKNTIIGRFDGNQGGLDIRTSSNNIVLSDGDGNWRFRSDSNGYLFGPGIYTNTTSSSANVAVVHSSGDITRSTSSRRYKNSIQDSTAGLAELNTLRTVSFKGNNDGDIVFNGLIAEEVHDAGLTQFVEYDEENRPDALRYPHMVSLCIKAIQELSAKNDALEARITALENA
Physico‐chemical
properties
protein length:607 AA
molecular weight: 62120,97220 Da
isoelectric point:5,31481
aromaticity:0,08072
hydropathy:-0,34366

Domains

Domains [InterPro]
DC_1422
STR
1–177
DC_1422 DC_2098 DC_0203
IPR011049
STR
78–216
IPR011049 DC_1988 IPR030392
Coil
Unmapped
587–607
Coil
QBQ72446.1
1 607
Architecture
STR
STR
RBD
STR 1-216 | STR 218-420 | RBD 483-607
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72446.1
1 607
Domain Start End Length (AA) Confidence
N-terminal 1 18 18 0,7633
Central domain 19 427 410 0,9093
C-terminal 428 607 179 0,9315
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-18
Central
19-427
C-terminal
428-607

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-1
[NCBI] 		2559280 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72446.1 [NCBI]
Genbank nucleotide accession
MK613343.1 [NCBI]
CDS location
range 28302 -> 30125
strand -
CDS
ATGAGCAAGGCAAGAGAACTCGCAGATTTTGTAGCAGCAGGGAATCCCCTTGCTGATGGTTCTATTACTTTTGATGAAATAGCTGATGGTAATTTAACTATTACAAGTGGCACGATTAAGCTGGATGGGAATTATCCTACTGGTTCAGACAACGTGGCGTTGGGCAATACTGCTTTAGATGCGCTTACAAGTGGGTCAAGAAACACAGCAATTGGTTCTGCGTCTTTGACAGCAAACACAAGCGGGCAAAACAACGTTTCGCTTGGCTTCAATTCAATGCTGGCAAACACATCAGGCTCAGACACAGTTGCAGTAGGCGTGGGTGCTTTAGACAGCAACACAACAGGCTCTAATAATGTGGCATTGGGTCGTTCAGCTTTACAAGCTAACACCACCGCAAGCCATAGCACTGCCGTTGGGTATCAAGCGATGTATAGTAATACGTCTGGGTACGGAACAGCGGTTGGTGCTTATTCCTTAGATGCAAGCACAACAGGAACCCACAACACGGCTGTCGGCTCATCGTCACTATCTGCAAATACTTCAGGCTCTTATAACTCTGCCTTGGGGCATCATGCACTAGCTAGTAGCACCACCGCAAGTAACAACGTGGCCGTGGGGTATCAGGCTGGGTATAGTAATACTACGGGGACTATAAACGAAGCGATTGGGTATAGAGCATTACACACTAACTCTACTGGTAGCTATAACACCGCTTTAGGTGGAGATGCACTGCACAACAACACTACTGCTTCATATAATGTTGGTATGGGGTATAGGTCTTTATTTGCTAACACCACGGGTGCAAATAATACAGCCTTGGGTTATAATGCACTACTTAACAACACCACCGCATCCTACAACACTGCTGTGGGGTATCAGTCAGGTTACAGCAATACAACAGGTCAAAACCATGCGTTCTTTGGCTACAAGGCTGGTAACAGCAATACTACTGGTACAGCAAATGCATTCCTTGGTGATCAGTCTGGGCGCAACACCACCACTGGCAGCTATAACTCTGCATCAGGTCCAGCCGCATTATACTCAAATACATCAGGTAGCTATAATACGGCTATGGGTGGCAATTCTCTGTTTAGCAATACCACCGCATCCTACAACACAGCAGTTGGGTATCAGGCGGGGTTTAGCTCGACAGCGGGAAACCAAGTATTTGTGGGTCGTGGTGCGGGATACTCTATGACATCCAACAACGCAAACACTATGGTTGGAGACATTGCTGGCAACAAAACAACAGGCGGTCAAAATACATTCTTTGGTCAACAAGCAGGGTATTGGGTGACTTCTGGTGCTAAAAACACCATCATTGGACGCTTTGACGGCAACCAAGGCGGCCTAGACATCCGCACCTCAAGCAACAACATCGTGCTGTCTGATGGGGATGGTAATTGGAGGTTTAGATCAGACTCTAATGGTTATTTATTTGGCCCAGGAATTTATACTAATACAACTTCATCCTCTGCTAATGTAGCTGTTGTTCACTCTTCTGGCGATATTACAAGATCTACATCATCAAGAAGATACAAAAACTCTATACAAGACTCTACGGCTGGTCTTGCAGAACTTAATACTCTTAGAACTGTTAGCTTTAAGGGTAACAACGATGGGGATATAGTATTTAATGGTTTGATCGCTGAAGAGGTTCATGATGCTGGACTAACTCAGTTTGTTGAATACGATGAAGAAAATAGACCCGATGCTCTACGTTATCCACATATGGTATCTTTGTGTATCAAAGCTATCCAAGAACTTTCAGCAAAGAACGATGCACTAGAGGCACGGATCACTGCCCTAGAAAACGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d3697faa76caaef38a1dcb1dada0a05b5dd354219e920a0719aede905e779705
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8702
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank