Protein

View in Explore
Genbank accession
YP_009323449.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATLKQIQFKRSKVAGVRPAPAQLAEGELAINLKDRLLFTKDDTGAIIDLGFAKGGNIDGNVIHKGNYNQTGDYTLNGVFTQIGDFNLNGIARVTRDIIAAGQIMTEGGELISKSASTSHLRFFDGDDRERGIIFSPNNAGLTNQVVNIRVQDYAAGSESTYAFSGNGVFSSPEVFGWKSVSTPVIYTNKVITNKKVKGDYDIYSLADNTPFEEGETAINHLRVMRNAVGAGIFHEVNVNDGITWYSGDGLDTYLWSFNWAGGLKAGHSISVGLPGGSKGYSELGTASIALGDNDTGLKWHQDGYFFSVNNGTRTFLSGPAETTSLRKMVMGYSVNGTDLTTPPSENYALATVVTYHDNNAYGDGQTLLGYYQGGNYHHYFRGKGTTNVNTAGGLLVTPGNIDVVGGSVNIDGRNNASTLMFRGNTTGSSSVDNMTIAVWGNTFTNVDGDRKNVMEISDATSWMWYIQRKTDDKVEAHLNGALRVNGSIDVGREVNVSGTIAGNAVNALRIWNDDYGAIFRRSEGSLHIIPTAFGEGKTGDIGPLRPFSLALDTGKVVIPDLDLSHTTFAENGFIKFGGHGAGAGGYDIQYAQAAPIFQEIDDDAVSKYYPIVKQKFLQGKAVWSLGTEINSGTFVLHHYKEDGTQGHTSRFNADGTVNFPDNVQVGGGEATIARNGNIFSDIWNGFNGAGNITNIRDAIATRVSKEGDTMTGRLTLKTNSDAVVIDYPADEAGYVKGKKGGVDNWYVGNGGADNGLAFWSFQSQGGININPNGEVILSPQGTSIFSINRDRIYMNGAHWVARKSGAWGDQWGLEAPYFLEFGSVGEDSYYPIIKGRSVISGQGYTTSVELGMRRTPQQWGQAIIRVGNAERGDGPVGIFEFHSSGRFYSPSSVQTPSISVNTDNGLGASSIAIGDNDTGLVHGGDGRINMYANSMHIASWGAGYHIHEGLWDTTGALWTETGRAIISFGHLVQQNDSYSTFVRDVYVRSDIRVKKDLVKFENASQTLSKINGYTYMQKRGLDEEGNQKWEPNAGLIAQEVQAILPELVEGDPDGEALLRLNYNGVIGLNTAAINEHTAEIAELKSEIEELKALIKSLLK
Physico‐chemical
properties
protein length:1100 AA
molecular weight: 118680,17930 Da
isoelectric point:5,35937
aromaticity:0,09727
hydropathy:-0,32291

Domains

Domains [InterPro]
DC_0538
STR
1–705
DC_0538 G3DSA:6.20.80.10 IPR030392
DC_0339
STR
615–1035
DC_0339 Coil
IPR030392
CHP
990–1049
IPR030392
DC_2320
RBD
1017–1100
DC_2320
YP_009323449.1
1 1100
Architecture
STR
RBD
STR 1-1035 | RBD 1036-1100
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009323449.1
1 1100
Domain Start End Length (AA) Confidence
N-terminal 1 649 649 0,1052
Central domain 650 848 200 0,2799
C-terminal 849 1100 251 0,8765
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-649
Central
650-848
C-terminal
849-1100

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage WG01
[NCBI] 		1837931 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009323449.1 [NCBI]
Genbank nucleotide accession
NC_031928 [NCBI]
CDS location
range 156769 -> 160071
strand +
CDS
ATGGCTACTTTAAAGCAAATCCAATTTAAAAGAAGTAAAGTAGCCGGTGTACGTCCGGCACCGGCCCAGTTGGCTGAAGGCGAACTGGCTATTAACTTAAAGGACCGTTTACTTTTTACTAAAGACGATACTGGAGCGATTATCGACCTTGGCTTTGCTAAGGGTGGAAATATCGATGGTAATGTTATTCATAAAGGCAATTACAACCAAACCGGCGATTATACACTTAATGGTGTATTTACTCAAATTGGTGATTTCAATCTCAATGGTATTGCTCGTGTAACTCGTGACATTATTGCCGCTGGCCAGATAATGACCGAAGGCGGCGAGCTTATTTCTAAGAGCGCCTCAACTTCTCACCTTCGTTTCTTTGATGGTGATGATCGTGAACGTGGTATTATCTTTTCTCCAAATAATGCGGGTCTTACCAATCAAGTAGTTAATATTCGCGTCCAAGATTACGCTGCAGGAAGTGAAAGCACCTACGCGTTTTCAGGCAATGGTGTATTTTCTTCACCAGAAGTTTTTGGGTGGAAATCTGTATCAACTCCGGTAATTTATACCAATAAAGTTATTACTAATAAAAAGGTTAAAGGTGATTATGACATCTATTCGTTGGCTGACAACACTCCATTTGAAGAAGGCGAAACGGCTATTAACCACCTCCGTGTTATGCGAAATGCTGTAGGAGCAGGTATTTTCCACGAAGTTAATGTTAATGACGGAATAACCTGGTATTCCGGAGATGGCTTAGACACTTATCTTTGGTCGTTTAACTGGGCCGGTGGATTGAAAGCCGGTCATTCTATTTCTGTAGGTCTTCCAGGTGGTTCTAAAGGATATTCTGAATTAGGAACTGCATCAATTGCTCTTGGTGATAATGACACCGGGTTAAAATGGCACCAAGATGGTTATTTCTTTAGTGTAAACAACGGCACAAGAACTTTCCTGAGCGGCCCTGCAGAAACCACCAGTCTTAGAAAAATGGTTATGGGTTATTCTGTAAACGGTACCGATTTAACCACTCCTCCGTCGGAAAACTATGCTTTGGCGACGGTTGTCACTTATCATGATAATAACGCGTATGGCGACGGTCAAACTCTTTTAGGTTATTATCAAGGTGGCAATTATCACCACTATTTCCGTGGTAAAGGTACTACAAACGTTAACACCGCTGGTGGTTTGTTAGTTACTCCGGGTAATATTGATGTTGTTGGCGGTTCGGTTAATATTGATGGCCGCAACAATGCTTCTACACTAATGTTCAGAGGAAATACTACAGGAAGTAGTTCAGTTGATAATATGACTATCGCCGTTTGGGGTAATACCTTTACTAATGTTGATGGTGACCGTAAAAACGTAATGGAAATATCTGATGCCACTAGTTGGATGTGGTATATTCAGCGCAAAACCGATGACAAAGTTGAAGCCCATTTAAACGGTGCCTTACGTGTAAATGGAAGCATCGACGTCGGCAGAGAAGTTAACGTCTCCGGCACTATTGCTGGTAATGCGGTCAATGCTCTTAGAATTTGGAACGACGACTACGGTGCCATTTTCCGCCGTTCGGAAGGAAGTCTTCATATTATTCCTACCGCCTTTGGCGAAGGTAAAACTGGTGATATCGGACCACTTCGTCCATTTAGTTTGGCATTAGATACTGGTAAGGTTGTTATTCCTGACCTGGATTTGAGTCATACAACTTTTGCTGAAAATGGTTTTATTAAATTTGGCGGTCATGGTGCAGGTGCAGGTGGTTATGATATTCAATATGCACAAGCAGCTCCTATTTTCCAAGAAATTGATGATGACGCAGTAAGTAAATATTATCCTATTGTTAAGCAGAAATTCTTACAAGGAAAAGCTGTTTGGTCTTTAGGTACTGAAATTAATTCCGGGACTTTTGTTTTGCATCATTACAAAGAAGACGGGACCCAAGGTCATACATCAAGATTTAATGCTGATGGTACAGTTAATTTCCCGGATAACGTACAGGTCGGTGGTGGTGAAGCTACTATTGCTAGAAATGGTAATATTTTCTCTGATATTTGGAACGGATTTAATGGTGCAGGTAATATAACTAACATTCGCGATGCCATTGCTACTCGTGTTTCTAAAGAAGGTGACACGATGACAGGCCGCTTAACTCTTAAAACCAACTCAGATGCCGTGGTTATTGATTATCCAGCAGATGAAGCAGGTTATGTTAAGGGTAAAAAAGGTGGTGTTGATAACTGGTATGTAGGTAATGGTGGTGCTGATAATGGTTTAGCCTTCTGGAGCTTCCAATCCCAAGGCGGTATTAATATTAACCCGAATGGTGAGGTTATTCTATCTCCACAGGGCACTAGTATATTCAGTATAAACCGCGACCGCATCTATATGAACGGTGCCCACTGGGTTGCGCGTAAATCTGGTGCGTGGGGCGACCAATGGGGTTTAGAAGCACCTTATTTCCTTGAGTTTGGTAGCGTGGGTGAAGACAGTTATTATCCCATTATTAAAGGCCGATCTGTAATTAGTGGTCAGGGTTATACTACTTCTGTTGAATTAGGCATGCGTCGTACTCCACAACAATGGGGACAAGCTATAATTCGTGTTGGCAACGCTGAACGTGGCGACGGTCCCGTAGGTATTTTCGAATTCCACTCTAGTGGTAGATTTTACTCCCCGTCTTCAGTCCAGACCCCTTCAATTTCTGTCAATACTGATAATGGATTGGGCGCTTCTAGTATTGCTATTGGTGATAACGACACAGGTTTAGTCCATGGTGGTGACGGCCGAATTAATATGTATGCCAATAGTATGCATATTGCAAGCTGGGGAGCCGGTTACCATATCCATGAAGGTCTTTGGGATACCACTGGTGCCTTGTGGACTGAAACAGGAAGAGCTATTATTTCTTTTGGTCATTTAGTCCAACAAAACGATAGCTATTCAACATTTGTTCGTGACGTTTATGTTCGTTCTGATATTCGTGTTAAAAAAGACCTTGTTAAATTTGAAAATGCTTCACAGACACTTTCAAAAATTAACGGTTACACTTATATGCAGAAACGTGGCCTGGATGAAGAAGGTAATCAGAAATGGGAACCTAATGCCGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCTGAATTGGTTGAAGGCGACCCTGACGGTGAAGCTTTACTTCGTTTAAACTATAACGGTGTAATTGGTTTAAATACAGCTGCAATCAATGAGCACACTGCAGAAATAGCAGAATTGAAATCAGAGATTGAAGAACTTAAAGCACTAATTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1583af29efc71e95661cc6b199de1c982aefd78b7f3cea96333b8e70de0adb71
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5382
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of T4 like phage of avian pathogenic Escherichia coli Xu,J., Chen,M. and Zhang,W. 2016-05 — GenBank