Protein

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Genbank accession
YP_009149565.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MYKEGENIIKLSLARVTKVNYKYNTVEVMTTLHKNSTSKNPSDNGRYSARLPVMFGGRTPEGKVYGSNTIVTVGSLVLIGFLEGNKDHPIVLNIYGDADNQSMLTRTTMTGGDESDEAIQRELWQLFTLYPSMTYQNIDGRGNKEVTFSGKSFMYITDSDPGNEYVQDGAFDYADLPSSRYANGELIEPTSPNSPTVLYVHQGIYDKHRVTFFLKSDGTLRVGSRHRNGKGITYQEMKTDGSFSIVQKQDTTNPEEVSHKFSKFEISENGDVTIQSPDHKLTITKDGVLIDGKSIGSGGGGGDLEIIKELQEKVENVTTQVTMVNGKLDFKIDKIEIEIDLDTLRQEQQKVLDSIREKLDGLSSALKEMKDYTIPAFEDGIVTADEKKKVNSLLDAVGTEKNKVDEKYSQVISDPFLPATHKDILTVSKGVLDSRHQALLNTIEIVMLDGVITPDERIAVAQAFDGYEQEIAAMDVSFKQAMDKILEARIKEAQENAMKYRDTEMRKIGSQITQLADSITAKVSSEQLSKEIEDVRSEMATKEEQQAIKDTAEKAQKDAEEALKKVPHRIMVGSTNGLIFRNNEIDSVLYAKVYRGDDEVTSTIPKGNFFWTRISEDEDGDLQWNKDHVGVGSSFKISKDDVPKRATFECDVEIPDN
Physico‐chemical
properties
protein length:657 AA
molecular weight: 73348,39520 Da
isoelectric point:4,97974
aromaticity:0,06849
hydropathy:-0,57321

Domains

Domains [InterPro]
DC_0209
STR
1–657
DC_0209
SSF69255
ATT
40–93
SSF69255 Coil Coil Coil
YP_009149565.1
1 657
Architecture
STR
ATT
STR
STR 1-39 | ATT 40-93 | STR 94-657
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009149565.1
1 657
Domain Start End Length (AA) Confidence
N-terminal 1 95 95 0,6544
Central domain 96 588 494 0,1785
C-terminal 589 657 68 0,1454
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-95
Central
96-588
C-terminal
589-657

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage BCP8-2
[NCBI] 		1129192 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bacillus cereus
[NCBI] 		1396 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009149565.1 [NCBI]
Genbank nucleotide accession
NC_027355 [NCBI]
CDS location
range 7716 -> 9689
strand -
CDS
ATGTACAAAGAGGGAGAGAATATCATTAAGCTCTCCCTTGCTAGGGTTACAAAAGTTAACTACAAATACAATACAGTAGAGGTTATGACAACACTACATAAAAATTCAACATCGAAGAATCCGAGTGACAACGGTAGATACTCTGCTAGACTACCCGTCATGTTCGGTGGACGTACACCTGAAGGAAAAGTGTATGGTTCGAATACAATCGTTACAGTCGGATCGTTAGTCTTAATCGGGTTCCTAGAAGGTAACAAAGACCACCCTATTGTTTTAAACATCTATGGAGATGCAGATAATCAGTCGATGTTAACACGTACAACGATGACAGGTGGAGACGAATCAGACGAAGCAATCCAACGTGAGTTATGGCAGTTATTTACTTTATACCCTTCTATGACATATCAGAATATTGATGGTCGAGGAAATAAGGAAGTAACTTTCTCAGGTAAGTCATTCATGTACATTACAGACTCAGACCCTGGTAATGAATACGTACAAGATGGGGCTTTCGACTACGCAGATTTACCGAGTTCTCGTTACGCAAACGGTGAATTGATTGAACCAACATCTCCGAACTCTCCTACAGTATTATACGTCCATCAAGGGATTTATGACAAACATAGAGTTACATTCTTCCTAAAATCGGATGGAACACTTCGTGTAGGTAGTAGACATAGAAATGGTAAAGGTATTACATATCAGGAAATGAAAACTGATGGATCGTTCTCTATTGTACAGAAGCAAGATACAACGAACCCTGAAGAGGTATCTCACAAGTTCTCTAAGTTTGAAATTTCTGAAAATGGTGATGTTACAATCCAGTCTCCTGACCACAAATTAACTATCACAAAAGATGGTGTCCTGATTGATGGTAAGTCAATCGGTTCAGGTGGTGGAGGAGGAGACCTTGAGATTATCAAGGAATTACAAGAAAAGGTAGAGAACGTAACTACGCAAGTAACAATGGTCAACGGTAAGCTAGATTTCAAGATTGATAAGATTGAAATTGAAATCGACTTGGATACGCTTCGACAGGAGCAACAAAAGGTATTAGATAGTATCCGAGAAAAACTAGACGGACTTTCTAGTGCGTTAAAGGAAATGAAAGATTATACGATCCCTGCATTCGAGGACGGTATTGTTACCGCAGATGAGAAGAAAAAGGTTAACTCTCTTCTAGACGCAGTAGGTACCGAGAAGAATAAGGTAGACGAGAAGTATAGCCAAGTTATCTCCGATCCGTTCCTACCAGCCACACACAAAGATATACTAACAGTATCGAAAGGTGTATTAGACAGTAGGCACCAAGCGTTACTTAACACAATAGAAATCGTTATGTTAGACGGTGTTATTACTCCTGACGAACGTATAGCAGTAGCCCAAGCATTCGATGGATACGAGCAAGAGATAGCTGCTATGGATGTGTCCTTTAAACAGGCAATGGATAAAATCCTTGAAGCCCGTATCAAAGAAGCACAAGAGAATGCAATGAAGTATAGAGATACAGAGATGCGTAAAATCGGTTCGCAGATTACACAACTAGCTGACTCTATCACGGCAAAGGTTAGTTCAGAACAATTATCAAAAGAGATAGAAGATGTTCGTTCTGAAATGGCTACAAAAGAGGAACAACAAGCAATCAAGGACACTGCGGAGAAAGCACAGAAAGACGCAGAGGAAGCTTTGAAAAAGGTACCTCATCGCATCATGGTAGGCAGTACAAACGGACTAATATTTAGAAATAACGAAATAGATAGTGTCCTATATGCTAAGGTATATAGAGGAGATGACGAGGTTACATCTACTATACCTAAGGGTAACTTCTTTTGGACTCGTATTTCGGAGGATGAGGATGGAGACTTACAGTGGAATAAAGACCACGTAGGTGTAGGAAGTTCATTCAAAATCTCTAAAGATGATGTCCCAAAAAGAGCAACATTTGAATGTGATGTAGAGATACCTGATAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f171b606872c3aba5ea79e682620b4fe38e22e1a4e7439623567b368380e5764
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6932
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and Proteomic Analysis of Broad Host Range Virulent Bacillus Group Phage BCP8-2 Leading To the Creation of New Genus within Myoviruses Bandara,N., Asare,P.T. and Kim,K.P. 2015-08-04 — GenBank