Protein

View in Explore
Genbank accession
YP_009003325.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRDGVDLAGEIGTYHAIAAADIGHELTCRVTPSNAIGSTPVVTAPIVALPPRVYFDIAAGNDASDGQSTATAKQTSATSGSLTSGSSAAFKANGVWANRLLIGSNIRYESYDVGAKPQFGVAGVAFTIDSYTDDGSLGRSGVTLDGLSIIADQRGLQTRQGASWTVQNCLFDDIGFRPPSGQQENTQGMMFYKTNHLKILNNFMDRVYNDDLYIDTCNNVLINGNTIMPCFGAEGDNIQTRADRTDPHQIGIEIGHNYLDMGSRKTGSGKGCIVTNMQSYAYIHDNILIGNNFGHGTDEGHHHVCARNRMRHARKNSYSWLIGIGGYDNQPYSSDHQMYDNYLEDANRGHAYTGIGVSNYTGPLSARADMRCYDETIVNCTVGLRIDRPTSGIFRGWVFHNVGTPINRVNTTYVNEGTIHDFISGDHWIYKGAISRPPEVITRATITGTRQVGQVLTGDAAVFDTAEVLAAFPGAVITRSFQWRRHARMPFPYTGYYLPFYGHGCDWIEGATADSYQIAAEDVGCLVSRVERIHLTFTEGGVEKVVTALAYDGSYVGSAEIIA
Physico‐chemical
properties
protein length:563 AA
molecular weight: 61207,39980 Da
isoelectric point:5,71609
aromaticity:0,09591
hydropathy:-0,26838

Domains

Domains [InterPro]
DC_0400
STR
1–59
DC_0400 IPR011050 G3DSA:2.60.40.2700
DC_2223
STR
48–147
DC_2223 DC_0572
DC_2234
RBD
145–310
DC_2234
YP_009003325.1
1 563
Architecture
STR
RBD
STR 1-419 | RBD 420-563
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009003325.1
1 563
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,8331
Central domain 44 449 407 0,9523
C-terminal 450 563 113 0,5551
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-449
C-terminal
450-563

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage vB_RleS_L338C
[NCBI] 		1414737 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009003325.1 [NCBI]
Genbank nucleotide accession
NC_023502.1 [NCBI]
CDS location
range 99859 -> 101550
strand +
CDS
ATGCGCGACGGCGTAGACCTCGCAGGCGAGATCGGCACCTACCATGCCATCGCGGCGGCTGACATCGGTCACGAACTGACGTGCCGTGTCACCCCCTCCAACGCCATCGGCTCGACGCCCGTGGTAACCGCGCCCATCGTCGCCCTGCCGCCGCGCGTTTACTTCGACATCGCCGCAGGTAACGACGCCAGTGACGGCCAGTCCACCGCGACGGCGAAACAGACCTCTGCCACCTCCGGCTCGCTCACCTCCGGTTCGTCGGCAGCGTTCAAGGCCAATGGTGTATGGGCGAACCGCCTCCTGATCGGCAGCAACATCCGCTACGAGAGCTACGACGTGGGCGCGAAGCCTCAGTTCGGCGTGGCTGGCGTGGCCTTCACCATCGACAGTTACACCGACGATGGCTCGCTCGGAAGGTCTGGCGTCACTCTTGACGGTCTCTCCATTATCGCCGACCAGCGTGGTCTTCAGACACGCCAGGGCGCTAGCTGGACCGTCCAGAACTGCCTGTTCGATGATATCGGCTTCCGCCCGCCGAGTGGTCAGCAGGAAAACACTCAGGGCATGATGTTCTACAAGACGAACCACCTGAAGATACTCAACAACTTCATGGATCGCGTGTACAACGACGACCTGTATATCGACACCTGCAACAACGTCCTGATCAATGGCAACACGATCATGCCGTGCTTCGGCGCGGAAGGCGACAACATCCAGACCCGTGCCGACCGTACCGATCCTCACCAGATCGGCATCGAGATCGGTCACAACTACCTCGACATGGGTTCGCGCAAGACGGGCTCGGGCAAGGGCTGCATCGTCACCAACATGCAGAGCTACGCCTACATCCATGACAACATCCTGATCGGCAATAACTTCGGACACGGCACCGACGAAGGTCATCACCATGTCTGCGCCCGTAACCGCATGCGCCATGCGCGCAAGAACTCTTACTCTTGGCTGATCGGCATCGGCGGTTACGACAACCAGCCGTATTCGTCCGACCACCAGATGTACGATAACTACCTGGAAGACGCGAACCGTGGCCACGCCTACACCGGCATCGGCGTCAGCAACTACACCGGGCCGCTCTCGGCTCGCGCTGACATGCGCTGCTACGACGAAACCATCGTCAACTGCACGGTCGGCCTCCGTATCGACCGCCCGACCTCCGGTATCTTCCGTGGTTGGGTCTTCCACAACGTCGGCACCCCGATCAACCGTGTGAACACGACCTACGTCAACGAAGGCACGATCCACGACTTCATCAGTGGCGATCACTGGATTTACAAGGGCGCTATCAGCCGTCCGCCGGAAGTCATCACCCGCGCGACCATCACTGGCACCCGTCAGGTCGGCCAAGTGCTCACGGGCGATGCTGCCGTCTTCGATACGGCGGAAGTCCTCGCTGCCTTCCCCGGCGCGGTCATCACCCGTTCCTTCCAGTGGCGTCGGCATGCTCGCATGCCGTTCCCCTACACCGGCTACTACCTGCCGTTCTACGGCCATGGCTGTGACTGGATCGAAGGTGCCACGGCAGACAGCTACCAGATCGCCGCAGAAGACGTTGGTTGCCTCGTCTCCCGCGTCGAGCGTATCCACCTCACCTTCACGGAAGGCGGCGTCGAGAAGGTCGTTACCGCACTGGCATACGACGGCAGCTATGTCGGATCGGCAGAGATCATCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e36b0f1c200b96fa89a1780a184ad74b0ad2e1bbe7d619cf508edf5ff88b762
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7592
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequence of rhizobiophage vB_RleS-L338C Restrepo-Cordoba,M., Halmillawewa,A.P., Hynes,M.F. and Yost,C.K. 2015-09-16 — GenBank