Protein

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Genbank accession
YP_004414872.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALYRRGTASMDADGTVHGTDTKWKDQLALIRVGATIVFLEQPIKLAVISDIVSDTELKAISTDGQTASDGKYVILLNDSLTVNGLAQNVAETLRYYQSKETEIAAAIDLINQLDMNKLEQIVADVNKAKSDSQAAQNQAELARDAANAARDETNSIKNQTQQIVDSAVGGINAAKDQAITDIGSKESSVISHIDTEEASAIQAINDAKGDLSVYVNDAQTAAQTATSAKNDAQAARDDAVRSKDAASVSAQEAKDAANSINADNLLTKDGNLSGLVNKKESRKNIGLGENDAVNFLTINTTGAIGAGRNSWDGSNWGSQSILSSLMIMSPDGVSEPGIYVRKKNGSDGYAGTLLFYEYANYFETNNRFRSNQFLCQKTTMGYNQMWSASCFQGNAFTADSGAENYQSLVAGSCDTRGQGYVGGVAFGMMTTGNPEWPRAQISVGAQDRDGAGNIGLQMHFRFMASGQISYAGPQGAGSFQQVPASDRNIKHSIKDDESSIAYNNIKSMRFRNFIFNDDEQERVRRGVIAQEIEEIDNLYVKRRLYESHELNGPKVERLELDTTPLLLDTMRALQDTIKKVEELQEEIKMLKSK
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64488,76630 Da
isoelectric point:4,89949
aromaticity:0,06229
hydropathy:-0,47357

Domains

Domains [InterPro]
DC_1541
STR
78–513
DC_1541 Coil
Coil
Unmapped
119–153
Coil DC_0247
IPR030392
CHP
486–536
IPR030392
IPR030392
CHP
486–588
IPR030392
YP_004414872.1
1 594
Architecture
STR
RBD
STR 78-513 | RBD 514-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004414872.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,9929
Central domain 281 479 200 0,0518
C-terminal 480 594 114 0,9988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-479
C-terminal
480-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Shfl1
[NCBI] 		2919551 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004414872.1 [NCBI]
Genbank nucleotide accession
NC_015456 [NCBI]
CDS location
range 33869 -> 35653
strand -
CDS
ATGGCTTTATACAGACGCGGTACTGCATCAATGGATGCAGACGGTACGGTTCACGGAACAGATACAAAATGGAAAGATCAGCTTGCTCTGATTCGAGTCGGTGCAACTATCGTATTCCTGGAGCAACCAATTAAGCTGGCTGTAATTAGCGATATTGTGAGCGACACAGAGCTAAAGGCTATCTCTACGGATGGTCAGACCGCATCTGACGGAAAGTATGTGATCTTGCTTAACGATTCGTTAACTGTTAACGGCTTAGCTCAAAACGTTGCCGAGACGCTTCGATACTATCAAAGCAAAGAGACTGAGATCGCGGCAGCTATAGATCTGATAAATCAGCTTGATATGAATAAACTTGAGCAAATAGTTGCTGATGTGAATAAGGCGAAATCTGATTCTCAAGCTGCGCAAAATCAGGCTGAATTAGCGCGTGACGCAGCCAACGCTGCGCGTGATGAAACTAACTCAATCAAGAATCAGACACAGCAGATTGTTGACAGTGCTGTCGGTGGAATTAATGCCGCAAAAGATCAGGCTATCACTGATATCGGCTCTAAGGAATCATCTGTCATCTCTCACATCGACACGGAAGAGGCTTCGGCTATTCAGGCAATTAATGATGCTAAAGGTGATTTATCGGTTTACGTTAACGACGCTCAAACGGCAGCGCAAACGGCAACCTCTGCAAAAAACGATGCTCAGGCAGCGCGTGACGATGCCGTAAGATCAAAAGATGCGGCTTCGGTAAGCGCTCAAGAAGCTAAAGACGCAGCTAATAGCATTAATGCCGATAATCTTTTAACTAAGGATGGTAATCTCTCTGGTCTTGTGAACAAAAAAGAGTCTAGAAAAAATATTGGGTTAGGTGAAAATGATGCTGTTAACTTTCTTACTATTAACACCACCGGGGCTATAGGTGCAGGAAGGAACTCATGGGACGGTTCTAACTGGGGTAGTCAGTCCATATTGTCATCATTGATGATTATGTCACCTGATGGAGTGTCTGAGCCAGGGATTTACGTCAGAAAAAAAAATGGCAGTGATGGATATGCTGGGACTTTATTATTTTACGAATATGCAAACTACTTCGAGACTAACAATAGATTCAGATCCAATCAGTTTTTATGCCAGAAAACAACTATGGGTTATAACCAGATGTGGTCCGCTTCATGCTTTCAAGGAAATGCTTTCACCGCCGATAGTGGTGCTGAAAACTATCAATCGCTTGTTGCTGGATCGTGTGATACGAGGGGGCAAGGGTACGTTGGCGGCGTAGCTTTTGGCATGATGACTACGGGCAATCCTGAATGGCCCAGGGCACAAATATCAGTAGGTGCTCAAGATAGGGATGGAGCAGGCAATATTGGTCTGCAAATGCATTTCAGGTTTATGGCTTCAGGGCAAATATCTTACGCTGGACCGCAAGGGGCTGGAAGTTTCCAACAAGTTCCGGCATCTGACAGAAATATAAAGCACAGCATAAAGGATGATGAATCAAGCATTGCATACAACAATATAAAATCAATGAGATTTAGGAACTTTATATTTAACGATGATGAGCAAGAAAGGGTAAGGCGAGGTGTTATAGCTCAGGAGATAGAAGAGATCGACAATCTATATGTTAAGAGAAGGTTGTATGAGAGCCACGAGCTAAACGGGCCAAAAGTTGAAAGGCTTGAGCTTGATACAACTCCTTTATTGCTTGACACTATGAGAGCTTTGCAGGATACAATAAAGAAAGTTGAAGAGTTACAAGAAGAGATAAAAATGTTGAAGTCCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
46ca8a48aa9bd92de3d0c973d21fa1e9c787bc755a7df86997302ef3ffeb0cbe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Therapeutic potential of Shigella phages isolated from Brazil Gregoracci,G.B., Carazzolle,M.F., Brocchi,M. and Mieczkowski,P.A. 2015-04-10 — GenBank