Protein

View in Explore
Genbank accession
XYY22285.1 [GenBank]
Protein name
outer membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MADYLATYETPGTGAVMQVEVNFAGQRPDLPNDPAPYLDPANVKAMIVTEATSTTVEVVRDITVTLVNSTTFRTDEIVPLGTILRVYRITDIEFPIVDFVSLQVVSEADLDLQARQTLYAVMESRDAATRAQVYANFAQSVSVEANASAKDAVEKAEAAVRTADAAALAATNAVQVANQANTKSDEALAAAEAAEEHATNVETLAQSAQDAAAAAQQEATDARLAAENAVNIANGIDGKADAALEAAQRADTNAAQALSVANGIAATAEAARVTANEAKDAADNAVSVAGAVDAKAQTALDTANAANVSAQNAVLIAQAAVTSATNANGGVTAANGRIDVLASRVLALETWRTAATATLTNHDTNITLNYNSIEALKLRAAALEALNAPRLPEFVLECADNAAMVIVNGELWMSCGSAAVYTNIGVGRGASGLTGRYGLDNFQQVPIPSQSPVVQATTNGQNSFALLANGDLYAWGNNGHGQLGLGHTTAQGTPTLSAQGVREIYGHYTNAAYSTAPSKMYIRKDDAIYAAGYNAYGQLGVGDATNRSTWTATWVLAGAPVRKVFNLGADFGCGVILTTDNRMFVCGRNLQGQLGTGNGSDVRNWTDVTAAWGGTAVVAQMTDASGGFGYSSTAGDGTCWLAMFSKNVGVRVCGANTYGILGNGNTTNTVVPFNTPLPSLPVDNVGVRVCGANTYGILGNGNTTNTVVPFNTPLPSLPVDWMVLGDQPGAIFILGQDKKVYSWGYCDANGQLGRGLTTSNATPGALPLTNVAALLSRGQSQYGYGFVYAAFVLLESGVVMGWGANGYGTAGAGDTAVSLVPRRVLLPYREPDGSVMVPHALFYQNGSQAAGGPGTIGMFTKAGNLYAWGHNGQQQLSGQGAASASEVVPAVFTVPWRKRT
Physico‐chemical
properties
protein length:900 AA
molecular weight: 93061,58020 Da
isoelectric point:4,76080
aromaticity:0,07000
hydropathy:0,00500

Domains

Domains [InterPro]
DC_0245
STR
1–220
DC_0245 IPR009091 IPR009091
IPR005604
ATT
34–130
IPR005604 Coil Coil IPR009091
IPR051553
Unmapped
177–674
IPR051553
IPR000408
STR
469–496
IPR000408 IPR009091
IPR000408
STR
470–516
IPR000408
XYY22285.1
1 900
Architecture
STR
ATT
STR
STR
STR 1-33 | ATT 34-130 | STR 131-220 | STR 342-897 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22285.1
1 900
Domain Start End Length (AA) Confidence
N-terminal 1 387 387 0,9665
Central domain 388 590 204 0,5279
C-terminal 591 900 309 0,5066
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-387
Central
388-590
C-terminal
591-900

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaP1
[NCBI] 		3446274 Viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22285.1 [NCBI]
Genbank nucleotide accession
PV763893 [NCBI]
CDS location
range 14860 -> 17562
strand +
CDS
ATGGCTGATTATCTCGCCACGTATGAAACACCCGGCACCGGGGCAGTGATGCAGGTGGAGGTAAACTTCGCCGGTCAACGACCAGATTTGCCGAACGACCCAGCTCCGTACCTTGACCCTGCAAACGTCAAGGCCATGATCGTGACAGAAGCCACCTCCACCACTGTGGAAGTTGTGCGCGACATCACCGTCACCCTCGTGAACTCTACGACTTTCCGTACCGACGAGATCGTGCCACTGGGCACAATCCTCCGCGTGTACCGCATCACCGACATCGAGTTCCCTATCGTGGACTTCGTGTCTCTGCAAGTGGTGTCTGAGGCTGACCTCGACCTGCAAGCACGCCAGACGTTGTATGCTGTAATGGAATCCCGTGACGCTGCAACCCGCGCTCAGGTCTACGCCAACTTCGCACAGTCCGTATCCGTTGAGGCCAACGCATCGGCAAAGGACGCTGTGGAGAAAGCTGAGGCCGCTGTCCGCACTGCTGACGCCGCCGCTCTTGCCGCCACCAACGCTGTGCAGGTAGCGAACCAAGCCAACACCAAGTCCGACGAAGCGCTGGCCGCTGCTGAGGCTGCTGAGGAACATGCTACCAACGTTGAGACGCTGGCACAATCCGCACAGGATGCTGCTGCCGCTGCCCAACAGGAGGCGACCGACGCACGACTCGCTGCTGAGAACGCAGTGAACATCGCCAACGGTATTGACGGTAAGGCTGACGCCGCGCTGGAAGCCGCACAACGTGCTGACACCAACGCCGCACAGGCGCTGTCCGTGGCAAACGGCATTGCCGCTACTGCGGAAGCCGCACGGGTAACTGCAAACGAAGCCAAAGACGCTGCCGACAACGCGGTGTCTGTAGCTGGTGCAGTTGACGCTAAGGCGCAGACCGCTCTGGACACTGCCAACGCAGCTAACGTCTCGGCACAGAACGCGGTTCTGATCGCACAGGCTGCTGTTACTTCGGCAACCAACGCGAACGGTGGTGTTACTGCTGCAAACGGGCGCATCGACGTGCTCGCAAGCCGTGTACTGGCTCTGGAGACTTGGCGCACTGCTGCAACTGCCACTCTGACAAACCACGACACGAACATCACGCTGAACTACAACTCCATTGAGGCGTTGAAGTTGCGTGCTGCTGCGTTGGAGGCGCTGAACGCTCCACGGTTGCCCGAGTTCGTTCTGGAATGCGCAGACAACGCCGCTATGGTTATCGTAAACGGTGAGCTGTGGATGTCCTGCGGTAGCGCTGCGGTCTACACCAACATCGGAGTGGGTCGCGGAGCTTCTGGCCTCACTGGACGTTACGGTCTTGACAACTTCCAGCAAGTTCCTATTCCGTCGCAGTCTCCAGTAGTACAGGCCACAACCAACGGTCAGAACAGCTTTGCGCTGCTCGCCAATGGCGACCTGTATGCGTGGGGAAACAACGGCCACGGTCAGTTGGGCCTCGGGCACACTACTGCGCAGGGAACGCCAACTTTGTCGGCGCAAGGTGTTCGGGAGATCTACGGGCACTATACAAACGCAGCGTATTCCACAGCCCCATCCAAGATGTACATCCGAAAGGACGACGCAATCTATGCGGCTGGGTACAACGCCTACGGCCAACTCGGTGTTGGTGATGCTACCAACCGCAGCACTTGGACCGCTACTTGGGTTCTGGCTGGTGCGCCGGTTCGTAAGGTGTTCAACCTAGGTGCTGACTTCGGGTGTGGTGTAATCCTCACCACGGACAACCGGATGTTCGTTTGCGGACGTAACCTCCAAGGTCAACTTGGGACTGGTAACGGCTCTGACGTTCGTAACTGGACGGACGTGACTGCGGCGTGGGGAGGAACCGCAGTAGTGGCTCAGATGACTGACGCATCCGGTGGATTCGGCTACTCCAGCACTGCGGGTGACGGAACCTGCTGGTTGGCCATGTTCTCCAAGAACGTGGGTGTCCGGGTGTGCGGTGCCAACACCTACGGAATCCTAGGCAACGGCAACACGACCAACACAGTCGTACCTTTCAACACACCGCTCCCAAGCCTGCCTGTGGATAACGTGGGTGTCCGGGTGTGCGGTGCCAACACCTACGGAATCCTAGGCAACGGCAACACGACCAACACAGTCGTACCTTTCAACACACCGCTCCCAAGCCTGCCTGTGGATTGGATGGTGCTTGGCGATCAGCCGGGTGCGATCTTCATCTTGGGTCAGGACAAGAAAGTTTACTCTTGGGGTTACTGCGACGCGAACGGACAACTGGGTCGCGGGCTGACTACTAGCAACGCCACTCCCGGCGCACTGCCGTTGACCAACGTGGCAGCTCTCCTTAGTCGTGGGCAGAGCCAGTACGGTTACGGGTTCGTGTACGCTGCGTTTGTACTTCTGGAGTCCGGTGTTGTGATGGGTTGGGGCGCCAACGGGTACGGTACGGCAGGTGCGGGCGATACTGCCGTAAGCCTCGTTCCTCGCCGCGTACTACTCCCGTACAGAGAGCCGGACGGTAGCGTGATGGTCCCGCATGCCCTGTTCTACCAGAACGGGTCGCAGGCTGCTGGAGGTCCGGGAACCATCGGTATGTTCACCAAGGCAGGCAACCTGTACGCTTGGGGACACAACGGTCAGCAGCAGTTGAGCGGCCAAGGTGCCGCCAGCGCCTCCGAGGTTGTGCCTGCGGTCTTCACTGTACCGTGGAGGAAGCGAACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
effee190e3ae7e9df362c999bd30ed16c87ed230452e206c4218581b94b44030
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7294
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank