Protein

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Genbank accession
YP_009207438.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MERFMAEFGQGYVHVPVLSENNAVRYKLSIAGTCTKSPNYPYVKFQDEAFGPQTFQNGLNLIEIDPVTNTITATKNYGFTKDYDVISQAFVTYINSIPAGRIVCLISQGKLNASQTLIDWFRTHGSTAFPDKWLIDQVDTSYSAFYISGRNAIVKEHVLYNDGVTVEDVLTPLEMVYDDFADVGGTGFPLRIVEDGNTYYSNSTQEIKRFPTDSPITPAADYNMAPGDTFYLKFQLTYDQALKDLGTTQMSVRFFSGQTMIQSNDYDIPSTGQASPPAGAWMTFERYVVVPPNADGFTLYARKTVAAGQGGVRNIFFTEIARQETQAKSAEIGVNGIRMVVAGEPGNLGNVIAQLNDKNATKASQSGFVFAAEFREKE
Physico‐chemical
properties
protein length:378 AA
molecular weight: 41767,30290 Da
isoelectric point:4,88244
aromaticity:0,12169
hydropathy:-0,24550

Domains

Domains [InterPro]
DC_0912
STR
1–378
DC_0912
PS52031
LEC
22–192
PS52031
IPR039477
STR
57–128
IPR039477
YP_009207438.1
1 378
Architecture
STR
STR 1-378
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009207438.1
1 378
Domain Start End Length (AA) Confidence
N-terminal 1 71 71 0,6380
Central domain 72 270 200 0,4487
C-terminal 271 378 107 0,5088
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-71
Central
72-270
C-terminal
271-378

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_VR20
[NCBI] 		1567027 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gaprivervirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009207438.1 [NCBI]
Genbank nucleotide accession
NC_028894 [NCBI]
CDS location
range 153306 -> 154442
strand +
CDS
ATGGAAAGATTTATGGCTGAATTTGGACAGGGATATGTCCATGTTCCCGTGCTTTCTGAAAATAACGCAGTAAGATATAAATTGTCGATTGCTGGGACTTGTACCAAATCGCCAAACTATCCCTACGTTAAGTTTCAAGATGAGGCCTTCGGGCCTCAGACATTCCAGAATGGATTAAACCTTATTGAGATTGACCCAGTAACAAATACAATCACTGCAACCAAAAACTATGGTTTCACAAAAGACTATGATGTCATTTCACAGGCCTTTGTGACTTATATTAATTCCATCCCAGCGGGTAGGATTGTTTGTTTGATATCGCAGGGAAAATTGAATGCTTCCCAAACTTTAATTGATTGGTTCAGAACACATGGCTCGACTGCATTTCCGGATAAGTGGTTGATTGACCAAGTTGATACTTCGTATTCGGCTTTTTATATCTCTGGTCGAAATGCAATCGTTAAAGAGCATGTGCTATATAATGACGGGGTAACTGTTGAGGATGTATTGACTCCATTGGAAATGGTGTACGACGACTTCGCTGATGTGGGTGGCACAGGATTCCCTCTGCGCATCGTGGAAGACGGAAACACATATTATAGTAATAGTACACAAGAAATAAAACGCTTCCCCACAGACTCCCCCATCACTCCTGCGGCCGATTATAATATGGCCCCTGGTGATACTTTTTATCTGAAGTTTCAGCTGACATATGACCAGGCACTTAAAGACCTTGGAACAACTCAGATGTCTGTTCGATTCTTTAGTGGTCAGACGATGATTCAGTCAAACGATTATGATATCCCATCTACAGGTCAAGCAAGTCCACCGGCTGGCGCATGGATGACGTTTGAACGTTATGTAGTTGTTCCACCGAATGCTGATGGATTTACATTGTATGCAAGGAAGACCGTTGCTGCTGGACAAGGTGGAGTAAGGAATATTTTCTTTACAGAAATCGCGCGACAAGAAACACAAGCTAAATCTGCAGAAATCGGTGTCAACGGCATAAGAATGGTTGTAGCTGGAGAACCGGGAAATCTTGGTAATGTCATTGCACAATTGAATGATAAAAATGCAACTAAAGCAAGTCAATCTGGATTTGTATTTGCTGCAGAATTCCGTGAAAAAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fcbc09f9dd6d8cec0ff686bf8e87c8337419dd27e0ea432cfb027bf82238eb04
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6710
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank