Protein

View in Explore
Genbank accession
QCW21994.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MNDQEKIDKFTHSYINDDFGLTIDDLVPKVKPYGRFNVWLGGNESKIRQVLNAVKAIGVSPTLFAVYEKNEGYSAGLGWLNHTSAQGDYLTDAKFVARKLVSQSKQAGQPSWYDAGNIVHFVPQDVQRKGNEDFAKNMKAGTVGRAYIPLTAAATWAAYYPLGLKASYNRVQNYGNPFLDGANTILEWGGKIDGKGGSPSSGSSDSGSDSGGNSLLALAKQAMQELFKKVQDAMQWDVHSIGHDKYFSNDYFTLEKTFNNTYHIKMTIGLLDSLKKIIDSIHIDGGGSSSNPTDDDGEHNAISGKSVKPNGKSGRVIGGNWTYDQLPEKYKKAIGVPLFKKEYLYKPGNIFPQTGNAGQCTELTWAYMSQLHGKRQPTDDGQITNGQRVWYVYKKLGAKTTHNPTVGYGFSSKPPYLQASIYGIGHTGVVVAVFDDGSFLVANYNVPPYVAPSRVLLYTLINGVPENAGDNIVFFSGIA
Physico‐chemical
properties
protein length:479 AA
molecular weight: 52356,08560 Da
isoelectric point:8,64316
aromaticity:0,11482
hydropathy:-0,43090

Domains

Domains [InterPro]
DC_1289
STR
1–355
DC_1289 IPR007921
G3DSA:3.90.1720.10
RBD
352–459
G3DSA:3.90.1720.10
G3DSA:3.90.1720.10
RBD
355–459
G3DSA:3.90.1720.10
QCW21994.1
1 479
Architecture
STR
RBD
STR 1-355 | RBD 356-459 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage SA46-CTH2
[NCBI] 		2575260 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW21994.1 [NCBI]
Genbank nucleotide accession
MK764384.1 [NCBI]
CDS location
range 6295 -> 7734
strand -
CDS
ATGAACGACCAAGAGAAGATAGATAAATTTACACATTCCTATATTAATGATGATTTTGGTTTAACGATTGATGATTTAGTACCAAAAGTTAAACCTTACGGACGCTTTAATGTATGGTTAGGTGGTAATGAAAGTAAAATCAGACAAGTATTAAATGCAGTAAAGGCTATAGGTGTTTCACCAACCCTTTTTGCTGTTTATGAAAAGAATGAAGGGTATAGTGCAGGTTTAGGGTGGTTAAACCATACATCTGCACAAGGTGATTATTTAACTGATGCTAAATTTGTTGCTAGAAAATTAGTATCACAATCAAAACAAGCAGGTCAACCGTCATGGTATGATGCGGGTAACATTGTGCATTTTGTTCCTCAAGACGTGCAAAGAAAAGGTAATGAAGACTTTGCAAAAAATATGAAAGCAGGTACAGTAGGACGTGCCTATATCCCATTAACGGCGGCTGCTACTTGGGCAGCTTATTATCCACTAGGACTTAAAGCCTCATATAATAGAGTACAAAATTACGGTAATCCATTTTTAGACGGTGCAAATACTATTTTAGAATGGGGTGGTAAAATTGACGGTAAAGGTGGTTCCCCTAGTAGTGGTTCATCTGATAGTGGTTCTGATAGCGGTGGTAATTCATTACTAGCCCTAGCAAAGCAAGCCATGCAAGAATTATTTAAAAAAGTTCAAGATGCAATGCAGTGGGACGTACACAGTATTGGACATGATAAGTATTTTAGTAATGATTATTTTACTTTAGAAAAGACGTTTAACAATACGTATCACATAAAAATGACTATAGGGTTACTTGATTCACTTAAAAAGATTATCGACAGTATTCATATTGACGGTGGTGGTAGCTCATCTAATCCTACTGATGATGACGGTGAGCATAATGCAATTAGTGGTAAATCAGTTAAACCGAACGGAAAAAGTGGGCGTGTCATTGGTGGTAACTGGACATATGACCAATTACCAGAAAAATATAAAAAAGCGATTGGTGTACCTTTATTCAAAAAAGAGTATTTATATAAACCGGGTAATATATTTCCTCAAACAGGTAATGCAGGACAATGTACAGAATTAACATGGGCGTATATGTCACAATTACATGGTAAGCGTCAACCTACAGATGACGGTCAAATTACGAACGGGCAACGTGTATGGTACGTTTATAAGAAATTAGGTGCAAAAACAACTCATAACCCAACAGTAGGTTATGGTTTTTCAAGTAAACCACCATACTTACAAGCAAGTATTTATGGTATTGGACACACAGGTGTTGTCGTTGCTGTATTTGACGATGGTTCATTCTTAGTTGCAAACTATAACGTACCACCTTACGTTGCACCGTCACGAGTGTTATTATATACACTCATTAATGGTGTACCAGAAAATGCAGGTGATAATATTGTATTCTTTAGTGGTATTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c5e95b2e84f10009638ffbf61fab2d91dca678f4e7ecd1fe9676dabe38c6289a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6404
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biocontrol of Methicillin-resistant Staphylococcus aureus using bacteriophage cocktail Hoang,D.M., Hoang,S.M., Honjoh,K.-I. and Miyamoto,T. 2008-02 — GenBank