Protein

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Genbank accession
APU01488.1 [GenBank]
Protein name
baseplate wedge subunit and tail pin
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSIQKPKELIDTGIRGQEGTGDTLFDGGEKLNADLNSMWNVFGDYRIGKTSGFGNRVQTLHGTGYYQKHTRAYYAGSEQPSGNPVDFGSMHDISVTRDGAGDITINLPAGSGHAGECIELVNTDGSVGFGTGREVIIKTTGTGDSIGSLGNRMVINRTNFRIRLWVTEGSPAGSKWNYKLDSMFGDSATSYAANILNIAAGAQRNVVLFNKAQYNVVKHMLFVTQRGASVHQESCETLLMVNNTSNTDTNVYSTEYARIRTRTPSKPEDNLLFDATYSITGSSVILTVTNISQTAIDVYVKSIDAIGA
Physico‐chemical
properties
protein length:308 AA
molecular weight: 33250,64020 Da
isoelectric point:6,07736
aromaticity:0,08117
hydropathy:-0,31786

Domains

Domains [InterPro]
IPR036240
STR
1–306
IPR036240
IPR008987
ATT
7–184
IPR008987 IPR027412
G3DSA:1.20.5.960
Unmapped
18–49
G3DSA:1.20.5.960 IPR027411
APU01488.1
1 308
Architecture
ATT
STR
ATT 1-184 | STR 185-306 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APU01488.1
1 308
Domain Start End Length (AA) Confidence
N-terminal 1 101 101 0,7310
Central domain 102 297 197 0,0044
C-terminal 298 308 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-101
Central
102-297
C-terminal
298-308

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage 65.2
[NCBI] 		1932896 Uroviricota > Caudoviricetes > Pantevenvirales > Emmerichvirinae > Ishigurovirus
Host Aeromonas salmonicida
[NCBI] 		645 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APU01488.1 [NCBI]
Genbank nucleotide accession
KY290955 [NCBI]
CDS location
range 84751 -> 85677
strand -
CDS
ATGTCGATTCAAAAACCAAAAGAGCTAATCGATACTGGTATACGTGGTCAAGAGGGAACGGGTGATACACTATTTGATGGTGGTGAAAAACTAAACGCAGATCTGAATAGTATGTGGAACGTGTTCGGGGATTATAGAATAGGTAAAACTTCTGGATTTGGAAACCGAGTACAAACATTGCATGGAACCGGTTATTACCAGAAACATACAAGAGCGTATTATGCAGGTTCAGAACAGCCATCAGGTAACCCTGTAGATTTTGGGTCTATGCATGATATATCAGTTACAAGAGATGGTGCGGGTGATATTACAATAAACCTTCCTGCTGGTAGTGGTCATGCGGGGGAATGTATTGAGTTGGTCAATACTGATGGTTCCGTAGGATTTGGAACCGGTAGAGAGGTAATTATCAAAACTACTGGGACCGGAGATTCTATCGGATCGTTGGGTAACAGAATGGTAATCAATAGAACCAACTTTAGAATTAGATTGTGGGTTACAGAAGGTAGTCCAGCCGGTTCTAAATGGAATTATAAATTAGATTCTATGTTTGGTGATAGTGCTACTTCATACGCTGCCAATATTCTTAATATAGCCGCTGGTGCTCAACGTAACGTAGTTCTTTTCAATAAAGCTCAATATAACGTAGTAAAGCATATGTTATTTGTAACTCAGCGTGGTGCATCTGTACATCAAGAATCTTGCGAAACTTTACTGATGGTAAATAATACCAGTAATACAGACACCAATGTATATTCAACTGAATATGCGCGTATACGAACAAGAACTCCATCAAAGCCGGAAGATAACCTTCTATTTGATGCAACTTATAGTATAACTGGAAGTTCTGTTATTTTGACAGTAACTAATATCAGTCAAACAGCAATAGATGTATACGTTAAATCTATTGATGCAATCGGGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c14197a21652d6cee46017ddcf4246c9d7fdcd0f0789a899c59a05af1593b3dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7388
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50