Protein

View in Explore
UniProt accession
A0A8S5M374 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MDANVGTPSVTITASGANTAKVFNFAFKNLKGQKGDTGPRGPQGEQGPKGETGATGATPTITASATVSNTTGTPSVTVTRGGTDAAPTFAFAFTNLKGAKGDPGVNATTTAVATTSANGLMSSTDKSKLDGIAVGATKVIETTVSGWGFTKNAGTITGIKMNGSSKGTSGVVDLGTVLTAHQAIKINGTAITPGTLNLKAGSNVTFNNSNGTLTINSSASGTDTKNTAGSSNSTSKLYLVGATSQSSAGVTTYSNANVYATNGTLYSTNLTASGIIESDHYYSDRQTQ
Physico‐chemical
properties
protein length:288 AA
molecular weight: 28664,10060 Da
isoelectric point:9,44328
aromaticity:0,05208
hydropathy:-0,25764

Domains

Domains [InterPro]
DC_1577
STR
3–288
DC_1577
G3DSA:1.20.5.320
STR
30–81
G3DSA:1.20.5.320
A0A8S5M374
1 288
Architecture
STR
STR 3-288
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctOkv13
[NCBI] 		2826314 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD76600.1 [NCBI]
Genbank nucleotide accession
BK014805 [NCBI]
CDS location
range 12166 -> 13032
strand +
CDS
GTGGATGCTAACGTTGGTACTCCATCTGTTACTATCACAGCATCAGGCGCAAATACAGCAAAAGTATTTAACTTTGCTTTTAAGAATTTAAAAGGACAAAAAGGAGATACTGGTCCTAGAGGCCCTCAAGGAGAACAAGGACCTAAAGGTGAGACCGGAGCAACGGGCGCTACTCCAACTATTACTGCATCAGCAACTGTAAGTAATACTACAGGAACACCAAGCGTTACTGTTACTAGAGGCGGTACAGATGCTGCACCAACTTTTGCTTTTGCATTTACAAACCTAAAAGGAGCAAAAGGTGATCCTGGTGTTAATGCTACTACGACTGCAGTGGCAACCACTTCAGCAAATGGTTTGATGAGTTCGACAGATAAGTCTAAATTAGATGGAATTGCCGTTGGAGCTACAAAAGTTATTGAAACGACTGTTAGTGGTTGGGGATTCACTAAAAATGCTGGAACAATTACCGGAATTAAAATGAATGGTTCTTCAAAAGGAACAAGTGGAGTAGTTGATTTAGGAACGGTTTTAACCGCGCATCAAGCAATTAAAATTAATGGAACAGCAATTACACCTGGAACATTAAATTTAAAAGCAGGAAGTAATGTTACTTTTAATAATTCAAATGGAACCTTAACTATTAATTCATCTGCAAGCGGCACCGATACTAAAAATACTGCAGGATCAAGCAATTCAACTTCTAAATTATATTTAGTTGGAGCTACTTCCCAATCATCTGCTGGGGTAACTACTTATAGTAATGCTAATGTCTATGCAACTAACGGCACTTTATATTCAACTAATCTTACTGCATCAGGAATAATAGAAAGCGATCATTATTATAGTGATAGACAAACTCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
73dbc183748ad8c45499c3394c154389c525785a923ededc30d8381b7b9e5b66
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6492
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50