Protein

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Genbank accession
WCZ56766.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLTKPRLFRKASYLSQLGTLQNLANTGDDVLVIDVDYEFTNNETVDFKGKVVRIECDARFIGDGALIFTNMAAGSVVEKPFMESKSTPLVIFPWTEDGKWITDAQAVAATLKRSKTEGYQPGVNDWVKFPGLEQLMPQEVKEQYVVSTLDIRECVGIEVRRPGGIMAAYLFRNCHHCKVLDADSIIGGKDGIITFENLGGDWGVGNYAIGGRVHYGSGSGVQFLRNDGGGSHNGGVIGVTSWRAGESGFKTWQGSVGAGTSRNYNLQFRDSVALSPVWDGFDLGSDHGMAPEEDRPGDYPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRGGYVSNVTVQDCAGAGILAHTFNRVFSNITVIDCNYLNFDSDQIIIIGDCIVNGIRAAGIKPQPSKGMVISAPNSTLSGVVGNVPPDRILAGNILDPVMGNSLINSFNGDTAELSFRIHKLTKTLNSGAVRSTLNGGPGSGSAWTEVTAISGSAPNAVSLKVNRGDFKTTEIPVAHTVLPDEAVRDRGSLAMYFDNDVLWALVKRPNGTLTRTRIG
Physico‐chemical
properties
protein length:550 AA
molecular weight: 59069,01760 Da
isoelectric point:5,63640
aromaticity:0,07818
hydropathy:-0,13873

Domains

Domains [InterPro]
IPR011050
STR
1–549
IPR011050
IPR012332
STR
3–550
IPR012332
IPR015331
RBD
3–548
IPR015331
WCZ56766.1
1 550
Architecture
STR
STR 1-550
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCZ56766.1
1 550
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,9151
Central domain 28 448 422 0,9830
C-terminal 449 550 101 0,9339
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-448
C-terminal
449-550

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Kenya-K30
[NCBI] 		3027619 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCZ56766.1 [NCBI]
Genbank nucleotide accession
OQ291025.1 [NCBI]
CDS location
range 40583 -> 42235
strand +
CDS
ATGTCGTTAACTAAACCACGTCTCTTTCGGAAGGCTAGTTACCTGAGTCAGCTAGGTACTTTACAGAATCTGGCTAACACTGGTGATGATGTCCTTGTTATTGATGTTGACTATGAGTTCACCAATAACGAGACAGTAGACTTCAAGGGCAAAGTAGTACGTATCGAATGTGATGCACGATTCATAGGTGATGGTGCACTTATCTTCACCAACATGGCTGCTGGTTCTGTGGTAGAGAAGCCATTCATGGAGAGCAAGTCAACACCTTTGGTTATCTTTCCTTGGACTGAAGACGGTAAGTGGATTACAGATGCACAGGCGGTTGCTGCTACCTTGAAACGCTCTAAAACTGAAGGCTATCAGCCCGGAGTAAATGACTGGGTAAAATTCCCCGGCCTTGAGCAGCTAATGCCACAGGAGGTAAAAGAGCAGTACGTGGTGTCTACCCTTGATATTCGTGAGTGTGTAGGTATTGAGGTGCGACGTCCGGGTGGTATCATGGCGGCATACTTGTTCCGTAACTGTCATCACTGTAAGGTTCTTGATGCTGACAGCATCATTGGCGGTAAGGACGGTATCATCACTTTTGAAAACCTAGGCGGCGACTGGGGTGTAGGTAACTATGCCATCGGCGGTCGTGTCCACTACGGCTCAGGCAGTGGTGTTCAGTTCCTACGTAATGACGGCGGTGGCTCACACAACGGTGGTGTCATCGGTGTAACGTCGTGGCGTGCTGGAGAGTCTGGATTCAAGACATGGCAGGGTTCTGTAGGTGCAGGTACTTCCCGTAACTACAACCTTCAGTTCCGTGACTCCGTGGCGCTGTCACCTGTGTGGGATGGGTTCGATCTTGGGTCAGACCATGGCATGGCACCGGAAGAAGATCGACCGGGTGATTACCCAGTGTCTCAATACCCGATGCACCAGTTACCTAACAATCACATGGTTGATAACATTCTTGTTATGAACTCACTTGGTGTTGGCTTAGGTATGGATGGTCGTGGCGGGTACGTGTCTAACGTGACAGTACAGGATTGCGCAGGCGCTGGTATCCTTGCACACACATTCAACCGTGTGTTCTCTAACATCACCGTGATTGACTGCAACTACCTTAACTTTGACTCCGACCAGATTATCATTATTGGCGACTGCATTGTTAACGGTATTCGTGCTGCTGGTATCAAACCACAGCCCTCCAAGGGTATGGTAATTAGCGCACCTAATTCTACTCTTAGTGGTGTTGTAGGTAACGTACCACCAGACCGTATCCTTGCAGGTAACATCTTAGACCCGGTCATGGGTAACTCCCTCATTAATAGTTTTAACGGTGACACGGCTGAACTGAGCTTCCGCATCCACAAGTTAACCAAGACGTTAAATAGTGGTGCTGTTCGTTCTACACTGAACGGTGGGCCGGGTAGTGGTTCTGCATGGACTGAGGTAACTGCTATCTCAGGTTCTGCTCCAAATGCGGTATCGTTGAAAGTAAACCGTGGTGATTTCAAGACAACCGAGATCCCTGTAGCGCACACGGTTCTACCGGACGAGGCTGTACGTGACCGAGGCTCTCTCGCAATGTACTTCGATAATGATGTGCTTTGGGCCTTGGTTAAGCGCCCCAATGGTACGCTTACGCGAACTCGTATCGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
28f9019b110cdc0966e2908f8c1abc5cf7228001b82f56bb7ddd7877141bca5b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6719
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence of Salmonella phage Kenya-K30 Gunathilake,D., Makumi,A., Loignon,S., Trembley,D., Labrie,S., Svitek,N. and Moineau,S. 2024-01-11 — GenBank