Protein

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Genbank accession
YP_009599755.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIPCTGTIKASDINTELGRTPTSIFQIGNTPERTLAGKPSGLIKFSDFYCKSSADPLPWFLYEVQQTGGRGVNTDPAVFRVIDGSYSVFWGGSNGWLKFNNHFTGTIRQIEVTWKYSGRNGGWHGITVYERTNSASTYRLGSNTGIQKFVLDVNIPADQEIWLNWSGGGDQGDGNNVDYVAITNVVYY
Physico‐chemical
properties
protein length:188 AA
molecular weight: 20765,83290 Da
isoelectric point:6,08344
aromaticity:0,13298
hydropathy:-0,35213

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009599755.1
1 188
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,1144
Central domain 61 177 118 0,2109
C-terminal 178 188 10 0,9149
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-177
C-terminal
178-188

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage BF
[NCBI] 		1962671 Uroviricota > Caudoviricetes > Eneladusvirus >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009599755.1 [NCBI]
Genbank nucleotide accession
NC_041917 [NCBI]
CDS location
range 187248 -> 187814
strand +
CDS
ATGATACCATGTACTGGAACGATAAAAGCATCAGATATTAATACTGAATTGGGAAGAACACCAACATCTATATTTCAAATTGGAAATACACCAGAAAGAACTCTTGCAGGTAAGCCATCTGGTTTGATAAAATTTAGTGATTTCTATTGTAAATCATCTGCTGATCCGTTGCCTTGGTTCTTATATGAGGTACAGCAAACTGGTGGTCGTGGTGTAAACACAGACCCAGCAGTATTCCGTGTTATTGATGGTAGCTATTCTGTATTTTGGGGTGGTAGTAACGGTTGGTTGAAGTTTAACAATCACTTCACTGGTACTATTCGTCAAATTGAAGTTACTTGGAAATATTCTGGCAGAAATGGTGGTTGGCATGGTATAACTGTTTATGAACGTACCAATTCTGCAAGTACTTACAGATTAGGTAGCAATACGGGAATCCAAAAATTTGTTTTAGATGTTAACATACCAGCCGATCAAGAGATATGGTTGAATTGGTCTGGTGGTGGTGATCAGGGTGATGGTAACAACGTAGATTATGTAGCTATCACTAATGTAGTTTATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6923c5d0700eda1442fe59bbf0464d1d11f60efdc1db8e0454086ea83b59515
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5343
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Serratia marcescens phage BF Casey,E., Fitzgerald,B., Mahony,J., Lugli,G., Ventura,M. and van Sinderen,D. — — GenBank