Protein
View in Explore- Genbank accession
- YP_010111141.1 [GenBank]
- Protein name
- virion structural protein
- RBP type
-
TSP
- Protein sequence
-
MEIKRTQLVPRGMQQDLSISKFNPEFSYENRNIRITAREDSSLLSITNERGNKIIEFTDAEDTKFTSFKGTCIGYASLNSYIILFTHSEEDKEAPDRIYRIENLDKTTLMFEGNLNFSLDHLIETLPVYESEGVQKVYWTDSYNQPRVINFMNDPEPEKWGETTYYDFSPSMDPYSFIDVKKNSTGGQFAPGVIQHAFTYITDWHGVESNIVDTSSLNYISYDKRAAKEDETCYNSFSIRLSGLDARYKYVRVYSIHRTSLDTTPTVKILGEYEILKPEGDPVEYQDLRKELLTVVNKFNSSVYKPTWYDELPKLDPEYDSFAEAINSTFNVNISSIGNGIFTLQEVFEYIWKQKSSYVELVDTGVVGVNEDPTSLLYKDSSNSIVTTMAVKDSTLFVGGYTIPQDSNTEEDRIESINIYKEYGTTVVALVYLYTYIPGDTGSMVSAIKIRARDYLINGVSSTIKLRVQCNNSIVPVDVEIAEGESEVAFPQGDKGDVKTIVILNDKHGNAYYSDEDHIYYLADFEPYPSDSLILNGADGTYKWGYKDYITVEESQDVNTYTYTPYILQNGSACTQFKKGQPYRFALQGQYANGHWGDPILIKNLENAKEIYESNGSLEERDDSKFYVLDNQCTTSFLIDPILSQKITPQYTLTDIVTTKYSDRFEKVSNLMNKVTSEWFTLTSPPLRGSFWYFPTSCYQGSNKIDSTTDLYTMVISMGGNNIKCNPWMLIYNKEYFTDVKNEPNNGTGESDYLWTLPIDNIHKYILFRSNYTVNGKEFFSMWAGNLHRPQTQSYAIKFGGSSHWLNDEGKFRNSIDIPNNNFEGNFTTLYLNKLSITLSPNMCKALYNKGYRRVRLLYVKPTKVNRKYPAQGIVTNTIFLPTRRSNNACWAYTDYLSRPKEVYRVWNEYSKFFKNWSVRIGDMSLMLGNSTTQSSETRFLASPYFYPFIHRFYTDYSGGDPSSVWNSVWNTRPNYGHLMTTFHEVGGSTDTTATERLPSDNGEFFKKDTSEVDSFNYNPKYQLFTPNIKVNNLITSGNKTDFIAFDENIVDFWSPDIEYQEVDKNYFENTVEGFQLRGMSCVVSTTNSNYKTKEDGTVLGLLGYSDSANYYPFQDLESLDEKSDFTKGDYTKTSGGVPYLTSPQIAGLSPNVHRLYVSKLGTWSMNEAGQNYPHMWEDLGYKKEILSTSKKDKDSQFSYKKYCLNTLMFKDLKSLYYDINQPSLFIKGDPISSLSYYKTAYSGSTIVYNPGMDELLFKASENTGYNVPIQYKANTHLAFSLAKGKTLKYTTDNGLYDREIDTFPVMPELSAYAKYHDSNVVIGSADGRIVFLNLYWWPSKKSQRPDIYKNEAYSVTDSRKGGANGAVWKVALEANIPLPIDITVDLSYRLGFWKSGKESQLGRTSISLKAGQKSALKIFKEGFTTLRDWSTITVKSFRISKSNIPTGWTIDQGQMSVSNNSSTKPIVILLVDNNSYINGEELTGSDPFWVGSEGVYTKDLYDPLQEELLASEYDNVGIQSIIWHRNLPHFLLVDLVRSDAFLYADWTDSGIYQQVWIPCGKPTVLPIPDSEKPQSCIVEATEGDVFVGRYDCLRTASDSDKIEKVNDIVSFICESYVNPDGRADVNRYNTDTRAMNLDNWNVWNPVYSQANNFFNYTKNDYRVLEHSGQFPNQFSWTLPKYPDSLVDNWTNLTFASTYNLDGEYGKLTKIVAHNNQLYAFQDKAISNILYNTRVQIPVSDGLPVELANSNKVDGVRYISTTSGAQNKWSIITNRSGIYYIDHAKKNLNLISSEGIKEVTGVAHFTKWALNNLGYSTGELNLTDGMTNWKLSRDSIHDDVYIHDKNECLVFSERLAAFTSFFDYKNVPFMFRQDGQFLSIYSEDDTTSIYQQNAGIYNQFFDKPKVTSYIDYIVNPEMSRDKVFNNIEFRADAFTLENDDYTKYVPNRTLDHIHVRNEFQDTGDVALKQYKNLQKKFRMWRAYIPRDVKEVENYQLNRIRNPWIQMKLSYTPTELEDNKLVMHDLIVNYTV
- Physico‐chemical
properties -
protein length: 2031 AA molecular weight: 232948,45850 Da isoelectric point: 5,20278 aromaticity: 0,13392 hydropathy: -0,52418
Domains
Domains [InterPro]
IPR057889
STR
3–1883
STR
3–1883
DC_1659
RBD
1865–2031
RBD
1865–2031
1
2031
Architecture
STR 3-1883 | RBD 1884-2031
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
2031
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 493 | 493 | 0,7128 |
| Central domain | 494 | 783 | 291 | 0,5026 |
| C-terminal | 784 | 2031 | 1247 | 0,1012 |
Note: Constraints were applied during segmentation.
Fixed 37 C-terminal predictions appearing before Central domain
Fixed 37 C-terminal predictions appearing before Central domain
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-493
1-493
Central
494-783
494-783
C-terminal
784-2031
784-2031
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
uncultured phage cr108_1 [NCBI] |
2772069 | Uroviricota > Caudoviricetes > Crassvirales > Asinivirinae > Pipoluvirus |
| Host | No host information | ||
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
YP_010111141.1
[NCBI]
Genbank nucleotide accession
NC_055878
[NCBI]
CDS location
range 39814 -> 45909
strand +
strand +
CDS
ATGGAGATTAAAAGAACACAATTGGTGCCTCGGGGCATGCAACAAGATCTAAGCATCTCTAAGTTTAACCCTGAGTTCTCCTACGAGAATCGTAATATTAGAATCACTGCTCGTGAGGATAGCTCTCTATTATCCATAACTAATGAGCGTGGCAATAAGATTATAGAATTTACTGATGCTGAAGATACAAAGTTTACTAGCTTTAAAGGAACTTGTATAGGCTATGCATCTTTAAATAGTTACATCATTCTTTTCACACATTCTGAAGAAGATAAGGAAGCTCCTGATAGGATTTATAGGATTGAAAATCTTGATAAGACAACTCTAATGTTTGAAGGTAATCTAAACTTCTCATTAGATCATCTTATTGAAACATTACCAGTCTATGAATCTGAAGGAGTTCAGAAGGTTTATTGGACTGATAGCTATAATCAACCTCGGGTTATAAACTTTATGAATGATCCCGAGCCTGAGAAGTGGGGAGAAACTACTTATTATGATTTCTCTCCTAGTATGGACCCTTACAGCTTCATAGATGTTAAGAAGAATAGTACAGGAGGTCAATTTGCTCCTGGAGTAATTCAACATGCTTTTACCTACATTACTGATTGGCATGGTGTTGAAAGTAATATTGTAGATACTAGTAGTCTCAATTACATATCATATGATAAGAGAGCTGCTAAGGAAGATGAAACTTGTTATAATAGTTTTAGCATAAGACTCTCAGGACTTGATGCTAGGTATAAGTACGTTAGGGTTTATTCTATACATAGAACATCTTTAGATACTACTCCTACTGTTAAGATTTTAGGAGAATATGAGATTCTTAAACCTGAGGGAGATCCTGTAGAATATCAAGATTTACGGAAAGAACTTCTTACAGTTGTTAATAAGTTTAACAGTTCAGTCTATAAGCCTACATGGTATGATGAACTTCCTAAATTAGATCCAGAATATGATTCTTTTGCTGAAGCTATTAATTCCACCTTTAATGTAAATATTAGTTCTATAGGTAATGGAATCTTTACTTTACAGGAAGTATTTGAATATATTTGGAAGCAAAAATCTAGCTATGTAGAACTAGTAGATACTGGTGTTGTAGGAGTTAATGAAGATCCTACATCTTTACTTTACAAAGATTCTAGTAATTCCATTGTAACTACAATGGCTGTTAAAGATTCCACTCTCTTTGTAGGAGGTTATACCATTCCCCAAGATTCTAATACCGAAGAAGATAGAATTGAGTCTATTAATATTTATAAAGAGTATGGAACTACAGTTGTTGCCTTAGTTTATCTTTATACCTATATTCCAGGTGACACTGGAAGTATGGTTTCTGCAATTAAGATTAGGGCTAGAGATTATCTTATAAATGGGGTAAGCTCTACTATAAAATTACGTGTGCAGTGTAATAATTCAATAGTACCTGTAGATGTGGAAATTGCTGAAGGAGAGAGTGAAGTAGCCTTTCCCCAGGGAGATAAGGGTGATGTAAAAACTATAGTAATCCTTAATGATAAGCACGGTAATGCATATTATAGTGATGAAGATCATATATATTACTTAGCGGACTTTGAACCTTATCCAAGTGATTCTTTAATTCTGAATGGGGCAGATGGAACTTATAAATGGGGTTATAAAGATTACATTACGGTTGAAGAGTCTCAGGATGTAAATACTTACACATATACTCCTTATATTCTGCAAAATGGTTCTGCATGTACTCAGTTTAAGAAGGGTCAGCCCTATAGATTTGCGCTACAAGGACAATATGCAAATGGGCATTGGGGTGATCCAATTCTTATTAAAAATCTTGAGAATGCTAAGGAAATATATGAATCTAATGGATCTTTAGAAGAGAGAGATGATAGTAAGTTTTATGTGCTAGATAATCAGTGTACAACCTCATTTCTTATAGATCCCATACTGTCTCAGAAGATTACTCCACAGTATACTTTAACTGACATAGTAACAACTAAGTATTCTGACCGGTTTGAGAAAGTCTCTAATCTAATGAACAAGGTAACGTCTGAATGGTTTACTCTTACTTCTCCACCTTTAAGAGGGTCATTCTGGTATTTTCCTACAAGTTGTTATCAAGGATCTAATAAAATTGATTCTACAACTGACCTTTATACAATGGTAATTTCGATGGGGGGCAATAACATTAAATGTAACCCGTGGATGTTAATTTATAATAAAGAGTATTTTACAGATGTAAAGAATGAGCCTAATAATGGCACAGGGGAGTCTGATTATTTATGGACTTTACCAATAGATAATATACATAAATATATCCTCTTTAGATCTAATTATACAGTTAATGGGAAGGAGTTCTTTTCCATGTGGGCAGGTAATCTTCATAGACCACAGACTCAATCCTATGCAATAAAGTTTGGTGGCTCTAGTCATTGGCTTAATGATGAGGGCAAGTTTAGAAATTCTATTGATATTCCGAATAATAACTTTGAAGGTAATTTTACAACTTTATATTTAAATAAGTTGTCAATTACTCTTAGCCCTAATATGTGTAAAGCCTTATATAATAAGGGTTATAGAAGAGTAAGATTATTATACGTAAAGCCTACCAAAGTTAATCGTAAATATCCTGCTCAAGGTATTGTAACTAATACTATATTTTTACCTACTAGGAGATCTAATAATGCGTGCTGGGCTTATACAGATTATTTATCTAGACCTAAAGAAGTTTATAGAGTATGGAATGAATATTCTAAGTTCTTTAAGAACTGGTCTGTCAGAATAGGAGATATGAGTTTAATGTTAGGAAATTCTACAACTCAGTCTTCAGAGACTAGATTTCTAGCATCTCCCTATTTCTATCCCTTCATTCATAGATTTTATACAGACTACTCTGGTGGAGATCCCTCTTCTGTATGGAATTCAGTATGGAATACTCGTCCTAATTATGGTCATTTAATGACTACATTTCATGAAGTGGGAGGTTCAACGGATACTACAGCTACCGAACGTCTTCCTAGTGATAATGGAGAATTTTTTAAGAAGGATACTAGTGAAGTAGATTCTTTTAATTATAATCCAAAGTATCAGTTATTTACTCCAAATATTAAAGTTAACAACTTAATTACAAGTGGTAATAAAACTGACTTTATTGCATTTGATGAAAATATTGTAGACTTTTGGAGTCCTGACATTGAATATCAAGAGGTTGATAAAAACTACTTTGAAAATACTGTAGAAGGATTTCAACTGAGAGGAATGTCTTGTGTGGTAAGTACTACTAATAGTAACTATAAGACTAAAGAAGATGGTACGGTTTTAGGTCTATTAGGATACTCTGATTCTGCCAACTATTATCCTTTCCAAGACTTAGAATCTTTAGATGAGAAGAGTGACTTCACGAAAGGGGATTATACTAAAACTTCTGGTGGAGTTCCTTATTTAACAAGTCCTCAGATTGCTGGATTATCGCCTAATGTACATCGTCTTTATGTATCTAAATTAGGTACATGGAGCATGAATGAGGCTGGTCAAAATTATCCTCATATGTGGGAAGACTTAGGATATAAAAAAGAAATTCTTTCTACGAGCAAGAAAGACAAGGATTCTCAGTTTTCATATAAAAAGTATTGCTTAAATACTTTAATGTTTAAAGATCTTAAGAGTTTATATTATGATATAAATCAACCCTCTTTATTTATAAAAGGAGATCCTATCAGTTCTCTTAGTTATTATAAGACTGCTTATTCTGGTAGTACTATAGTATATAATCCAGGAATGGATGAATTACTATTTAAAGCTAGTGAAAATACTGGTTATAATGTTCCTATCCAGTATAAGGCTAACACGCACCTAGCATTTTCTTTAGCTAAGGGAAAGACTCTTAAGTATACCACTGATAATGGATTATATGATAGAGAAATAGATACTTTCCCAGTTATGCCTGAGCTAAGTGCTTATGCTAAATATCATGATAGTAATGTAGTTATTGGATCGGCAGATGGTAGGATCGTCTTCCTGAATTTATATTGGTGGCCTTCTAAAAAGTCTCAGCGTCCAGACATTTATAAGAATGAGGCTTATAGTGTAACAGATTCAAGGAAGGGTGGAGCTAATGGTGCAGTATGGAAAGTGGCCTTAGAAGCTAATATTCCTCTTCCTATAGATATTACTGTAGATCTTTCATACCGGTTAGGCTTCTGGAAATCTGGTAAGGAGTCTCAACTTGGCAGAACCTCAATTTCTTTAAAAGCAGGTCAAAAGTCCGCACTTAAAATCTTTAAGGAAGGTTTTACTACACTAAGAGATTGGTCTACTATTACTGTAAAATCTTTTAGAATTTCTAAATCTAACATACCTACAGGTTGGACTATTGACCAAGGTCAAATGTCTGTTAGTAATAATAGTTCTACTAAACCTATTGTTATACTTTTAGTTGATAATAATAGTTATATTAATGGAGAGGAACTTACTGGTTCAGATCCTTTCTGGGTAGGTTCAGAAGGAGTTTACACTAAGGATTTATATGATCCTTTACAAGAAGAATTATTAGCTTCTGAGTATGATAATGTAGGAATACAATCTATTATTTGGCATCGTAATCTCCCTCATTTCTTATTGGTAGACTTAGTAAGATCTGATGCATTCTTATATGCAGACTGGACTGACAGTGGAATATATCAACAGGTGTGGATTCCTTGTGGTAAACCTACAGTATTACCTATTCCTGATTCAGAAAAGCCTCAGTCTTGTATAGTAGAAGCTACTGAAGGAGATGTCTTTGTAGGACGATACGACTGCTTAAGAACAGCTTCAGATAGTGATAAGATCGAGAAGGTAAATGACATAGTATCCTTTATCTGTGAGTCCTATGTTAACCCTGATGGTAGGGCTGACGTTAACAGGTATAATACTGATACTAGGGCTATGAACCTTGATAACTGGAATGTATGGAATCCTGTATATAGTCAAGCTAATAACTTCTTTAATTATACTAAGAATGATTATAGAGTCTTGGAGCATAGTGGACAATTCCCTAATCAGTTCTCGTGGACATTGCCTAAATATCCTGATAGTTTAGTAGATAATTGGACTAACCTAACCTTTGCATCTACTTATAATCTTGATGGAGAATATGGTAAGCTTACAAAGATTGTAGCTCATAATAATCAGCTATATGCTTTTCAAGATAAGGCTATTTCAAATATCCTTTATAATACGAGAGTACAAATCCCTGTATCAGATGGATTACCAGTAGAGTTAGCTAATAGCAATAAAGTTGATGGAGTAAGGTATATTTCTACAACTTCTGGAGCTCAAAATAAATGGTCTATTATTACTAATCGTAGTGGTATATATTATATTGACCATGCTAAGAAAAACCTTAATTTAATATCTTCTGAAGGTATTAAAGAAGTTACTGGTGTAGCACATTTTACTAAGTGGGCACTCAATAATTTAGGTTATTCTACAGGAGAGCTTAATCTTACTGATGGTATGACTAACTGGAAGCTGAGTAGAGATAGTATTCATGATGATGTGTATATACATGATAAGAATGAATGCTTAGTATTCTCTGAGAGATTAGCAGCATTTACGAGCTTCTTTGATTATAAGAATGTCCCCTTCATGTTTAGACAAGATGGGCAGTTCTTGAGTATATATTCAGAGGATGATACTACTAGTATCTATCAGCAAAACGCTGGTATTTATAATCAATTCTTTGACAAACCTAAGGTTACTTCTTATATAGATTACATAGTAAATCCTGAGATGTCTAGGGACAAAGTATTCAACAATATTGAGTTTAGAGCAGATGCCTTTACACTTGAGAATGATGACTACACTAAGTATGTTCCTAATAGGACCTTGGATCATATCCATGTAAGGAATGAATTTCAGGATACTGGGGATGTAGCTCTCAAGCAATATAAGAATCTTCAGAAGAAGTTTAGAATGTGGAGAGCTTATATTCCTAGAGATGTTAAAGAAGTTGAGAACTATCAGCTTAATAGAATTCGTAATCCGTGGATTCAGATGAAGTTATCTTATACTCCTACAGAGTTAGAGGATAATAAATTAGTAATGCATGATTTAATTGTTAACTATACAGTATAA
Genome Context
Genome Context
Tertiary structure
PDB ID
47a6db03539b0b30dbd0bde1e27f22c98f28e1970cae1450adbb306fd3a07c6c
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses | Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. | 2023-03-24 | — | GenBank |