Protein

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UniProt accession
A0A1U8VDI7 [UniProt]
Protein name
Pectate lyase superfamily protein domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNLVKAKYPVVEDYTVNVMDFGAVGDGVTDDTAAFVAAYNSAATAIIIPGDGKRFLITEPVGSTTVAKKKLWTGHPGAEVVLTGTGGFQVAGLGWGFSDIRFTPGAAAVPFAIKSGTLQSNRFSYVRGCEFRGRVAGHYFDVCVDLYNVWYSNFNDNYINQSGGADFSTGEIHGIGIRMSYCVNNSVRDNRIGSCAVNLQLTATEAPLGMMSSQFCCEGIVISGNTLIASPRNLDVREGYYIDVHDNVIDIPVPSTTNPVYFACMCSRLASNWISTMYGSVYVGKGESVLSHYDGTGNAVDSNVIRATSTATHDMLVIGGVGLLSIKGNQITFGRTAISGGNSGGNWNISDNVFSAQSEKVYDLGGINRVLYSNNKVYTTLPKALKTVSETSHVNPITWSTQLSVALAAAPLTTAGVVTPGQTFFVALPPGKFNGAPEGASATLANTNTFGVARYNKSMSSSTAVVFDYVGIGSPVVAGNYNFIITVMDTQAAF
Physico‐chemical
properties
protein length:494 AA
molecular weight: 52242,25550 Da
isoelectric point:5,98295
aromaticity:0,10121
hydropathy:0,10567

Domains

Domains [InterPro]
IPR011050
STR
9–384
IPR011050 DC_1029
IPR012334
STR
15–402
IPR012334
A0A1U8VDI7
1 494
Architecture
STR
RBD
STR 9-402 | RBD 406-493 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1U8VDI7
1 494
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,9144
Central domain 29 388 361 0,9882
C-terminal 389 494 105 0,9394
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-388
C-terminal
389-494

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage phiBO1E
[NCBI] 		1555207 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae subsp. pneumoniae KKBO-1
[NCBI] 		1384549 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
62923475dc594a21b3e8bc114eae138c7d2ce3444205ec09228370c81d037168
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
— — 28572684 PubMed