Protein

View in Explore
Genbank accession
YP_010659090.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MTTKVIFTFHNPDGSPQANEKFTVRLTRPGMSDAEHCVVIPETYEMVTDVKGEFTMDLESSTSAYRVTAIGDDDEYEDDPCSQYTFTFYVPDSADPVYVQELILMPPPTNLPWDEEAINKITQAVVDAREARDEAEAQADRAEVQVDLAKAEVVKAQDEVVKAKAEVTKAQAEVTKAAQQVELAKVEVGKAEASAAAAKVSETNAANAAAGSVASATAATNQANRAKTEADRAESLANQVAEKVEGGNLPALVGMNETFTYEGGEDHYNWTRTGPVSVSQHTGYIRVAKTDASSNRAFIRKSAEFPDGHWIAYFRVKTQTGTAAQNRSAQIRFIAADGKDYTVYFNINASGLVEPNTIHMQGSEGSTRNAATMFTGLSTESWLDMAVKFDAVNRHIELFRRMPDGTWQKGGGRLMVDTIKPTTIEISSMPVAPNGWWMDVDFITVCRPNLICYGDSIAAGQNEYGVTRGTEDYHNHRNWAGTWFGQSSLYATNRNNLVLVQGVEGWRTWQYLDSLGEIENSGVKVVFMHASTNDHKDATMTMAKRTSDTQAIIDRLHAVGAQVVLFNSMQGTKAFNDSLASGVTKLKAYTDQWWTEELHKVTGLGQVLDIARLVGKDGYFDPAIAADDGLHLTAASAKKIADKLGQFYSNSTSINGLAPLESPAFTGIPTVPTQTPFLPYGKQIANTEYVITFIQDWTSNYGYGDLSMRNRTGSQMEAGGVRSGYYYVPGDSSNPLPGNVYAFVHHMSYDTNKGWELWNHCYTDRVYMRYSNNAGVWQTPVEVVTEKWMERNSFMTPRVSAFNRLPVASSAGFEGVVPLQTNSSGAWRNVNAGVAGLGLLGATTAGNALHYIGGMPKAPTNDRANSNLNNLPDECGFYGLGPAPYSNIPPGVDAINPVGSTVYHQVYDANTATQIFIPRTSDICYFRRKAGGTWSPWVRYLTDLQLVGTTTDSSAGVPNGAIMQINGSAAVNVGVALRFADGTQIVRALLQLDYGAVDLLQRQFTFPMAFVGKPVVTATLEQGTVADINNMPLQALGPVMVASIYAGNCNVRVMRSQGYTAGGFAAGSKMLCSVIAMGFWK
Physico‐chemical
properties
protein length:1081 AA
molecular weight: 117545,27600 Da
isoelectric point:5,31771
aromaticity:0,09436
hydropathy:-0,27225

Domains

Domains [InterPro]
DC_0123
ATT
1–158
DC_0123 IPR051532 DC_0857
DC_1375
STR
116–759
DC_1375 cd19958
Coil
Unmapped
118–187
Coil Coil IPR036514
SSF52266
STR
447–645
SSF52266
cd00229
ENZ
450–647
cd00229
IPR013830
ENZ
452–635
IPR013830
YP_010659090.1
1 1081
Architecture
ATT
STR
ATT 1-158 | STR 159-1081
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010659090.1
1 1081
Domain Start End Length (AA) Confidence
N-terminal 1 244 244 0,9941
Central domain 245 495 252 0,5313
C-terminal 496 1081 585 0,8152
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-244
Central
245-495
C-terminal
496-1081

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PAP02
[NCBI] 		2713224 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010659090.1 [NCBI]
Genbank nucleotide accession
NC_070864.1 [NCBI]
CDS location
range 21156 -> 24401
strand -
CDS
ATGACTACCAAGGTGATCTTCACCTTCCATAACCCGGATGGCAGCCCACAGGCGAACGAGAAGTTCACCGTGCGACTGACCCGTCCTGGCATGAGCGATGCAGAGCACTGCGTCGTAATTCCCGAAACCTACGAGATGGTGACCGACGTCAAGGGCGAGTTCACCATGGACTTGGAATCGTCTACCTCTGCCTACCGCGTCACTGCTATAGGCGATGACGACGAGTACGAGGACGATCCCTGCTCGCAGTACACCTTCACCTTCTACGTGCCGGACTCTGCTGATCCGGTCTACGTGCAGGAACTGATCCTGATGCCCCCGCCCACGAATCTGCCGTGGGACGAGGAAGCCATTAACAAGATCACCCAGGCTGTCGTCGATGCCCGTGAGGCTCGTGACGAAGCTGAAGCTCAGGCTGACCGTGCTGAAGTGCAGGTAGATCTAGCCAAAGCCGAGGTCGTCAAAGCCCAGGATGAGGTCGTTAAAGCCAAAGCCGAGGTGACCAAGGCTCAGGCTGAAGTGACCAAAGCTGCTCAGCAAGTTGAGCTTGCGAAGGTCGAAGTGGGTAAGGCAGAAGCCTCTGCTGCTGCGGCCAAGGTCAGCGAGACCAATGCTGCGAATGCCGCTGCTGGTTCTGTCGCCTCGGCAACTGCTGCAACCAACCAAGCCAACCGTGCGAAGACGGAAGCTGATCGTGCCGAATCACTGGCAAACCAAGTCGCTGAAAAGGTGGAAGGCGGTAACCTGCCTGCACTGGTAGGGATGAACGAAACCTTCACCTACGAAGGTGGCGAGGACCACTACAACTGGACCCGTACTGGGCCAGTATCTGTGTCTCAGCACACTGGCTACATTCGGGTTGCTAAGACCGATGCCTCCAGTAATCGGGCTTTCATCCGCAAGTCTGCTGAGTTCCCGGATGGTCACTGGATCGCCTACTTCCGGGTGAAGACCCAGACGGGTACTGCTGCCCAGAACCGTTCGGCACAGATCCGCTTTATCGCTGCCGACGGTAAGGACTACACGGTCTACTTCAACATCAATGCCAGTGGTTTGGTGGAACCGAACACCATCCATATGCAGGGTAGCGAAGGGAGCACCCGAAACGCCGCAACCATGTTCACTGGTTTGAGTACCGAATCCTGGCTGGACATGGCAGTGAAGTTCGATGCTGTGAACCGGCACATTGAACTCTTCCGACGGATGCCCGACGGCACCTGGCAGAAAGGTGGCGGCCGCTTGATGGTGGATACGATCAAGCCTACGACTATCGAGATCTCCTCCATGCCTGTTGCCCCTAACGGGTGGTGGATGGACGTGGACTTCATCACGGTTTGCCGACCGAACCTCATCTGTTACGGCGACAGCATTGCTGCTGGTCAGAATGAGTATGGCGTAACCCGTGGTACTGAGGATTACCACAACCACCGTAACTGGGCAGGAACCTGGTTTGGTCAGTCCAGTCTGTACGCCACCAACCGGAACAACTTGGTCCTGGTGCAGGGTGTAGAAGGCTGGCGTACCTGGCAGTACCTGGATAGCCTGGGTGAGATCGAGAACTCCGGAGTGAAAGTGGTGTTCATGCATGCAAGCACGAATGATCACAAAGACGCTACCATGACCATGGCCAAGCGTACTTCGGACACCCAAGCCATCATCGATAGGCTACATGCTGTCGGTGCTCAGGTGGTCCTGTTCAACTCCATGCAGGGAACCAAGGCATTCAACGATTCGTTGGCCTCTGGGGTGACCAAGCTCAAGGCGTACACCGACCAGTGGTGGACCGAAGAACTGCATAAGGTTACTGGTTTGGGTCAGGTTCTGGATATCGCTCGACTGGTAGGTAAAGATGGATACTTCGATCCTGCTATCGCTGCTGACGACGGACTGCATCTGACTGCTGCATCTGCGAAGAAAATCGCTGACAAGCTGGGACAGTTCTACTCGAACTCCACTTCCATCAATGGTTTGGCTCCGCTGGAAAGTCCTGCGTTTACCGGTATTCCTACCGTGCCTACGCAGACTCCTTTCCTGCCTTACGGCAAGCAGATCGCCAACACCGAGTACGTGATCACCTTCATTCAGGACTGGACCAGTAACTATGGTTACGGTGACCTGTCGATGCGCAATCGAACCGGTTCCCAAATGGAAGCCGGTGGGGTGCGTAGCGGTTATTACTATGTTCCTGGGGATTCTTCTAACCCCTTGCCGGGGAATGTTTATGCATTCGTGCACCACATGTCCTACGACACCAACAAGGGTTGGGAACTCTGGAACCACTGCTACACCGACCGTGTGTACATGCGTTATTCGAACAACGCAGGTGTATGGCAGACGCCGGTAGAGGTGGTTACTGAGAAGTGGATGGAGCGTAATAGCTTCATGACCCCACGGGTTTCTGCATTCAACCGTCTGCCCGTGGCTTCTTCTGCTGGTTTTGAAGGGGTTGTTCCCTTGCAGACCAACAGTAGTGGGGCTTGGCGTAACGTGAATGCTGGTGTAGCTGGGTTGGGCCTTCTCGGTGCAACTACGGCTGGTAATGCACTGCACTACATTGGTGGTATGCCCAAAGCCCCAACCAATGATCGGGCCAACAGTAACCTCAACAATTTGCCTGATGAGTGTGGTTTCTACGGTTTGGGACCAGCACCGTATTCCAATATCCCTCCGGGGGTTGATGCGATTAACCCAGTGGGTTCTACCGTCTACCATCAGGTTTACGACGCCAACACCGCTACGCAAATTTTCATTCCGCGTACTTCGGACATCTGCTATTTCCGCCGCAAGGCAGGGGGAACCTGGAGTCCATGGGTTCGTTACCTGACTGATTTGCAGCTGGTAGGCACCACTACTGACAGCAGTGCCGGTGTTCCGAATGGTGCCATCATGCAGATCAATGGTAGTGCTGCTGTAAACGTAGGTGTTGCCCTCCGCTTTGCAGACGGTACTCAAATTGTTCGGGCGTTACTCCAATTGGATTACGGTGCAGTAGATCTCCTTCAGCGTCAGTTCACTTTCCCCATGGCTTTTGTGGGTAAGCCGGTGGTAACCGCCACCCTGGAACAAGGTACTGTTGCTGACATCAACAACATGCCTTTGCAGGCTCTTGGCCCTGTTATGGTTGCCAGTATCTATGCAGGCAACTGCAACGTGCGTGTCATGCGGTCTCAGGGGTATACTGCTGGTGGATTCGCAGCAGGCTCTAAAATGCTGTGCTCTGTCATCGCAATGGGGTTCTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
367f456bd95a4f667c5d7e53e8ada21416ef0aabf631b249d04f7c31ab71b393
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6761
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genomic study of Pseudomonas aeruginosa phage PAP02 Lee,J.-H. and Jeong,H.-J. 2021-09-27 — GenBank