Protein

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Genbank accession
YP_009352391.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MIVADTNGNEYRAPTSVLGGAHIFFTAEDNQTPFVYGRLVSPGHSVVGTPITLTATPILGGTAVVKTATTDDLGDFSYDFTTSLTRGVTYIIEARAALYLTATTVKLIAALAAPVSGVTATSTGKVGDVIAIDNPVFSGNPTAFRFRYLRGTAYVIPGADQQSYMSQADDDGDVITAQVQAINAGGESPWYSANAIGPMTNKTSVLLSSPVIAGPTTLGGRMTVTSPGAASQNAIIKSDEWQIDGAKIPAQKAPATRYMAGAAGTVAPTAFPDGSNHHGVGLSTATYTGSNTYSYSVGISATENDYINVAVGAAGGNEGPQKYDIAIKHLNSNSALRFRMYAAKYRGGVLVEEVQMAKVGVSGATQFSQLAVSTNALSQWTITYDFGEWLAGDILVFRQNVLNTSASSANSYQWDARAGASYATLPIGAVQDLQKTLSVFTTRGDMGGKKVRLARTFTNNNNEIVAYSNEITLEAAAGQTLVPANTTMPAIVARSDRSNTPWQIDLGAWSNQPTGYTVQWVDNGVDIAGATLMSYTPTTAQEGHTITCRVTPSNAIGPGIAQTTAGKVVQPAAIFANVATGNDGNDGLTAETAKQTLAISETIPTGATLIMAGDFGTRLRVGSNRNYEGLGAALTSIGGTNITYAIDQYTDDGSLGRSFVKVSKMTMRSGDRAINARQGSNWTIEDVVLADVGFSPLGGIAENASGFMFYRVNSLTLTRVEFNLVNSDALFSDTNDRVLIQDCKFLPVATVEGDTIQTRADRTVNNAPGPHQKGFILRGTLLDMHSRKTSSGKGCLVTNMQDYAYIHDNVMDGNNFVHGTDEGDNQVFCRNVSRYARKSSYSFGYAIGGYDNQPASHNHQIYDNSWYDMNRALSFTGISVTGYTGEKSGRVDIVAHDETIVKCANGVRVDRPTSGQFRGFVFHNVTKPQDRTLTTLPAGGDIQAFLWQDHFTYNGSVAAPPAVVTRAVITGGRNSGDTLTGPDTVFDTAAVLAAFPTAVITRSYQWRRHKPAIQWAGWSEHLGYQCEWIAGATAASYTITDAEQGCLVSRVDRIHLTFTEGGVSKTVTALAYDATYATSAPITRTGDLAVPLPLMPTSATVSAAAAEGALVVDLPTLLPGASRTLLHPSRAYDLYTGGAVAIDANGDLVRGTAALTAGSTFSVKIRQRRGIDVVDTSVSFTVTA
Physico‐chemical
properties
protein length:1184 AA
molecular weight: 125177,26270 Da
isoelectric point:5,85268
aromaticity:0,08277
hydropathy:-0,10203

Domains

Domains [InterPro]
DC_1007
ATT
92–232
DC_1007 DC_1007 DC_0572
G3DSA:2.60.40.2700
RBD
470–569
G3DSA:2.60.40.2700 DC_2223
IPR011050
STR
571–927
IPR011050
YP_009352391.1
1 1184
Architecture
ATT
ATT
STR
RBD
ATT 92-232 | ATT 464-593 | STR 594-927 | RBD 928-1184
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009352391.1
1 1184
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,7057
Central domain 213 444 233 0,6043
C-terminal 445 1184 739 0,1636
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-444
C-terminal
445-1184

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph10
[NCBI] 		1220717 No lineage information
Host Rhizobium etli CFN42
[NCBI] 		347834 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Rhizobiaceae > Rhizobium > Rhizobium etli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009352391.1 [NCBI]
Genbank nucleotide accession
NC_034248 [NCBI]
CDS location
range 89436 -> 92990
strand +
CDS
ATGATCGTCGCCGATACCAACGGCAACGAGTATCGCGCTCCGACCTCGGTTCTGGGCGGCGCGCACATCTTCTTTACCGCCGAGGACAATCAGACGCCGTTCGTCTACGGCCGCCTGGTCAGCCCCGGTCATTCCGTCGTGGGCACACCCATCACGCTCACCGCAACGCCTATCCTGGGCGGCACGGCAGTCGTCAAGACAGCGACGACCGACGACCTGGGGGATTTCTCCTACGACTTCACCACCTCGCTGACGCGCGGCGTCACCTATATCATCGAGGCGCGCGCCGCTCTCTATCTGACGGCAACCACGGTCAAGCTGATCGCAGCCCTCGCGGCCCCGGTCAGCGGCGTCACCGCGACCTCGACCGGCAAGGTCGGTGATGTGATCGCCATCGACAATCCGGTCTTCAGCGGCAACCCGACGGCCTTCCGCTTCCGCTATCTGCGCGGCACGGCCTACGTCATTCCCGGCGCCGACCAGCAGAGCTACATGAGCCAGGCCGACGATGACGGCGACGTCATTACGGCGCAGGTCCAGGCGATCAATGCGGGCGGTGAAAGCCCCTGGTATAGCGCCAACGCCATCGGCCCGATGACCAACAAGACGTCCGTGCTGCTGTCGAGCCCGGTGATTGCCGGCCCAACCACGCTCGGCGGCCGCATGACCGTCACCAGCCCCGGCGCTGCATCTCAGAACGCCATCATCAAGTCGGATGAGTGGCAGATCGACGGCGCCAAGATCCCCGCCCAGAAGGCACCAGCGACCCGCTATATGGCTGGCGCTGCCGGCACCGTGGCGCCGACCGCCTTCCCGGACGGCAGCAACCATCATGGCGTCGGGCTCAGCACCGCAACCTACACCGGCTCCAACACCTACAGCTACTCCGTCGGCATCAGCGCCACGGAGAACGACTACATCAACGTCGCCGTCGGTGCAGCCGGTGGCAACGAAGGCCCGCAGAAATACGACATCGCCATCAAGCACCTGAACTCCAACTCGGCGCTGCGCTTCCGCATGTATGCCGCAAAATACCGCGGTGGCGTGCTGGTCGAAGAAGTGCAGATGGCAAAGGTTGGCGTTTCCGGCGCCACGCAGTTCTCCCAGCTGGCCGTGTCCACGAACGCGCTCAGCCAGTGGACGATCACCTATGACTTCGGTGAATGGCTTGCCGGCGATATCCTGGTTTTCCGGCAGAACGTGCTCAACACGTCCGCCTCGTCGGCCAACAGCTATCAGTGGGATGCTCGTGCCGGCGCCTCTTATGCGACGCTGCCGATCGGCGCGGTGCAGGATCTGCAGAAGACGCTGTCCGTCTTCACCACCCGTGGCGACATGGGCGGCAAGAAGGTGCGCCTCGCCCGGACCTTCACGAACAACAACAACGAGATCGTCGCCTACTCCAACGAGATCACGCTCGAGGCCGCTGCAGGCCAGACCCTGGTGCCGGCAAACACGACCATGCCGGCGATCGTTGCCCGCTCCGACCGCTCCAACACGCCCTGGCAGATCGATCTCGGCGCCTGGAGCAATCAGCCGACCGGCTACACCGTCCAGTGGGTGGATAACGGCGTTGATATCGCCGGCGCCACGCTGATGAGCTACACGCCGACCACGGCGCAGGAAGGCCACACGATCACCTGCCGCGTCACGCCTTCCAACGCAATCGGCCCTGGTATTGCTCAGACCACGGCTGGGAAGGTCGTGCAGCCGGCTGCCATCTTCGCCAATGTTGCGACCGGCAATGACGGCAATGACGGCCTGACCGCTGAAACGGCCAAGCAGACGCTGGCGATCTCCGAGACGATCCCGACCGGCGCCACGCTGATCATGGCCGGTGACTTCGGCACCCGGCTGCGGGTTGGCAGCAACCGCAACTATGAGGGCCTGGGGGCGGCGCTGACGTCGATCGGCGGCACCAATATCACCTATGCGATCGACCAATACACCGACGACGGCTCGCTCGGCCGCAGCTTCGTCAAGGTCTCCAAGATGACGATGCGCTCGGGTGACCGCGCCATCAACGCTCGCCAGGGCTCCAACTGGACGATCGAGGACGTCGTGCTGGCCGATGTCGGCTTCAGCCCGCTGGGCGGCATCGCAGAAAACGCCTCGGGCTTCATGTTCTATCGGGTCAACAGCCTGACGCTGACCCGTGTCGAGTTCAACCTGGTCAACTCGGACGCGCTCTTCTCCGACACCAACGACAGGGTGCTGATCCAGGACTGCAAATTCCTGCCGGTCGCCACGGTTGAAGGAGATACGATCCAGACCCGTGCCGACCGCACGGTCAACAACGCGCCAGGTCCGCATCAGAAGGGCTTCATCCTGCGCGGCACGCTGCTGGACATGCATTCGCGCAAGACCTCGTCCGGCAAGGGCTGCCTGGTCACCAACATGCAGGACTACGCCTATATCCATGACAACGTCATGGACGGCAACAACTTCGTCCATGGCACCGACGAGGGCGACAACCAGGTCTTCTGCCGTAACGTCTCGCGGTATGCTCGCAAGAGCAGCTATTCGTTCGGCTATGCCATCGGTGGCTACGACAACCAACCGGCGTCGCACAATCACCAGATCTACGACAACTCCTGGTATGACATGAACCGCGCCCTGTCGTTCACCGGGATCTCGGTCACGGGCTATACCGGCGAGAAGTCGGGTCGCGTCGATATCGTTGCGCATGACGAGACCATCGTGAAGTGCGCCAACGGCGTGCGTGTCGACCGGCCGACCTCGGGCCAGTTCCGCGGCTTTGTCTTCCACAACGTCACCAAGCCCCAGGACCGGACGCTGACCACGCTGCCGGCCGGTGGTGATATTCAGGCGTTCCTGTGGCAGGATCACTTCACCTATAACGGATCTGTCGCGGCTCCGCCTGCCGTTGTCACGCGTGCCGTCATCACGGGCGGCCGCAACTCCGGCGATACGCTGACCGGCCCCGACACCGTGTTCGATACCGCAGCCGTTCTCGCTGCCTTCCCGACTGCGGTGATCACCCGCTCCTACCAGTGGCGCCGGCACAAGCCGGCTATCCAGTGGGCGGGCTGGAGCGAGCACCTCGGCTATCAGTGCGAGTGGATCGCCGGCGCGACCGCGGCGAGCTACACGATCACCGACGCCGAGCAGGGCTGCCTGGTCAGCCGTGTCGATCGTATTCACCTGACCTTCACCGAGGGCGGCGTGTCGAAGACGGTCACGGCGCTGGCCTATGACGCGACCTATGCCACCTCGGCGCCGATCACCCGCACCGGTGACCTGGCTGTGCCGCTGCCGCTGATGCCGACCTCGGCGACGGTCTCCGCAGCCGCTGCAGAAGGCGCTCTGGTCGTTGATCTGCCGACCCTGCTGCCGGGCGCGTCGCGCACGCTACTGCACCCCAGCCGGGCCTACGACCTCTATACCGGTGGTGCGGTTGCGATCGACGCCAACGGCGATCTGGTGCGTGGCACGGCCGCTCTGACGGCCGGCAGCACGTTCAGCGTCAAGATCCGACAGAGGCGCGGCATCGACGTGGTCGATACCTCGGTGTCCTTCACGGTCACGGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
22b9f7d139a101dbc9e2fffdb20d80c8f735b2eccc1e4750149a45d0797989c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6262
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50