Protein

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Genbank accession
YP_024938.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTVTSSNQDISYATDGATTSFPTGFYFLNQNDVFVDKIDSNGVLTPLVLGTDYSVSGAGVETGGAVTTSVVYAPGSMLHLYRLVPPTQETEFQQNDPFPSKTVEKALDKLTMLAQQTRAATINSIRYPLSEYGTDGTLPKKAERARKILGFDDSGQQVLIPMPASIGAGDLRNEAWTDGVDYVAGTSSSVTLSRSYGTKANLGTVVMAGIAQDPASYGIASDGVTLQFDSVIPVGVSRIWCIGGTTLSLYLPTNGAIPNVRNYGATGNGGVDDTLAIQECINSLASSGGEVFLPPGVYLYSTLTLPPGVSLRGASSFSSVLLEAHATGDCIIMQGDNTISNLQLNHKVTRTSGRTVWMQGNNCTLREFEAYNYYQLWDAQTSSGGAVVFPKVINGNIALPSVAFGSNLGFFTNYANALVDQLCVSGTGSGTQPGSGINLVNGDTCIISNTNITRHGINLNFRPGAGRNIFATHVSNSLFDSSNTLGNVLMAAQGGVFDTVFSNSWMGLASGAAGFGCNIAPPGGGNVDGVSFGNCIFPDNDVAGLSVAGTASNIFVDGGYACGSVNGYVFNAIQHFSVTNARAGNVATRGANSQFGIAVIGAADNYIIANNNLRGNGVGGLNDSGAGVSKIVSPNLV
Physico‐chemical
properties
protein length:637 AA
molecular weight: 66004,82000 Da
isoelectric point:4,81304
aromaticity:0,08320
hydropathy:0,05651

Domains

Domains [InterPro]
DC_0055
ATT
8–132
DC_0055 IPR011050
IPR024535
ENZ
259–363
IPR024535
IPR012334
STR
259–636
IPR012334
YP_024938.1
1 637
Architecture
ATT
STR
ATT 8-132 | STR 237-636 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_024938.1
1 637
Domain Start End Length (AA) Confidence
N-terminal 1 273 273 0,9933
Central domain 274 626 354 0,9955
C-terminal 627 637 10 0,1146
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-273
Central
274-626
C-terminal
627-637

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepC6B
[NCBI] 		2883949 Uroviricota > Caudoviricetes > Ryyoungvirus >
Host Burkholderia cepacia
[NCBI] 		292 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_024938.1 [NCBI]
Genbank nucleotide accession
NC_005887 [NCBI]
CDS location
range 19040 -> 20953
strand +
CDS
ATGACTGTCACCTCTTCGAATCAGGACATTAGTTACGCTACCGACGGAGCAACGACCAGTTTTCCCACGGGTTTCTACTTCCTGAACCAGAACGACGTCTTCGTCGACAAGATCGATTCGAACGGGGTCCTCACACCGCTGGTACTCGGCACCGATTATTCCGTGAGCGGCGCGGGCGTGGAGACAGGCGGCGCGGTTACGACGAGCGTCGTGTATGCACCGGGTTCGATGCTCCACCTGTACCGCTTGGTGCCGCCGACGCAAGAAACCGAGTTTCAGCAGAACGACCCCTTTCCGTCGAAGACCGTCGAGAAGGCGCTCGATAAGCTGACCATGCTCGCGCAGCAGACGCGTGCGGCGACGATCAACTCGATTCGCTATCCGCTCTCCGAATACGGAACCGACGGCACGCTGCCGAAAAAGGCGGAACGGGCTCGTAAGATTCTCGGGTTCGATGACTCTGGTCAACAAGTGCTGATCCCGATGCCGGCGAGCATCGGCGCAGGCGACCTGAGAAACGAGGCGTGGACGGACGGCGTCGATTACGTTGCAGGCACGTCGAGCAGCGTCACGCTGTCGCGTTCGTACGGTACGAAGGCAAATCTCGGCACCGTCGTGATGGCTGGTATAGCGCAGGATCCGGCGAGCTACGGGATCGCTAGCGATGGTGTGACGCTGCAGTTCGATAGCGTGATCCCCGTAGGGGTGTCGCGGATCTGGTGCATTGGCGGCACGACGCTGTCGCTCTACCTGCCAACGAATGGTGCAATTCCAAACGTCAGGAATTATGGCGCGACCGGAAACGGGGGCGTCGACGACACACTGGCGATCCAAGAGTGCATTAATTCGTTGGCGTCGAGTGGCGGAGAAGTGTTTTTGCCACCCGGCGTCTACCTCTATTCGACCCTGACGCTGCCGCCCGGTGTCAGCCTCCGTGGCGCTTCGAGTTTCTCATCCGTCTTGCTGGAAGCGCATGCGACCGGAGACTGCATCATCATGCAGGGCGACAACACTATATCGAATCTCCAGCTGAACCACAAAGTCACCCGCACATCGGGCCGTACGGTCTGGATGCAGGGGAACAACTGCACGCTCCGTGAATTCGAGGCGTACAACTACTATCAGCTGTGGGATGCGCAAACGTCAAGCGGCGGCGCCGTTGTTTTCCCGAAGGTGATTAACGGGAATATCGCTCTCCCATCCGTTGCTTTCGGTAGCAATCTAGGCTTTTTCACGAACTACGCAAATGCGCTGGTTGATCAACTCTGCGTATCAGGTACGGGTAGCGGTACGCAGCCCGGGTCCGGTATCAATCTGGTTAATGGCGATACATGCATCATCAGCAATACGAATATCACCAGGCACGGCATTAACCTGAATTTCAGGCCCGGCGCGGGGCGTAATATCTTTGCAACGCACGTCTCGAACAGCCTGTTCGATTCGTCCAACACGCTCGGCAATGTGTTGATGGCTGCTCAGGGCGGCGTGTTTGACACCGTTTTCTCAAATAGCTGGATGGGCCTTGCGTCGGGCGCAGCCGGATTCGGTTGCAATATCGCCCCTCCCGGTGGCGGTAACGTAGACGGCGTGTCCTTTGGCAACTGCATTTTCCCTGATAACGACGTGGCCGGACTGTCTGTTGCGGGCACTGCATCGAATATCTTTGTCGACGGTGGCTACGCATGCGGTTCGGTCAATGGCTACGTATTCAACGCCATCCAGCATTTTTCCGTGACCAATGCACGCGCCGGCAACGTTGCGACACGTGGCGCAAATTCGCAGTTTGGAATCGCCGTGATCGGTGCGGCGGACAACTACATCATCGCTAACAACAACCTGCGCGGTAACGGTGTTGGCGGCCTGAATGATAGTGGCGCCGGCGTGTCGAAAATCGTTTCTCCGAACCTGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8db2a5fc974dfe2a6bcc8dd6db0947075ae1218d061b37961ed9a0e6ce0cdbca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8198
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence of Burkholderia cepacia complex phage BcepC6B Summer,E.J., Christian,B.N., Collins,J., Morrison,W., Patel,P., Wells,W., Mebane,L., Gonzalez,C.F. and Young,R.F. 2004-05 — GenBank