Protein

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Genbank accession
QDH94165.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MPLYTQSIKNLKGGISQQPDILRFSDQGEQQINGWSSESDGLQKRPPTVWKKRLVTTTGSIPDNAKFHLINRDEREQYYIVFTGKDILVYDLEGRPYKVSGATDYVRTDTPRDDIRVITVADYTFVVNRKTTVLAGDGVAYSGYNMKHRALINLRGGQYGRKLKVGINGGAMVEHQLPSGSDANLDPPLVDAQAIGGALTTLLQAAYPTYKIALGSGYIVIEAPAGGEIKSVETEDGYANQLINAILDTVQTISKLPLAAPDGYIIRIQGETNSNTDEYFVRYDAASKTWRETVQPGTITGFNAGTMPHALVRQEDGSFEFRALDWSERGAGNEDTNPMPSFVDNKINDVFFYRNRLGFLSGENVIMSRSASYFAFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFAEQLLLWSDEVQFVMTSSGVLTSKSIQLDVGSEFAVSDNARPFAIGRSVYFSAPRGSFTSINRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGSSTENFITVSTSGASNKLFVYKFLFKDGVQLQASWSHWEFGKDEKIMASGCIGSTIYIVRKHKYGTDLEKLEFIKEAVDFAGEPYRLHFDCKASMIVDSTAFDSASYRTVLDVSVAYGGETPAEGVYAIADSAGRFVVLPNTDWAASRVVSVNGNWTGQIFIGRVYKFTYAFSRFLIKYEDQNGTVTEDSGRLQLRRAWVNYQHTGALTMKVSNNQREFVNVLNGYKLGDQEIGRINIGDGQFRFPMNGDAKQTRLTLESDAPTPLSVVGCGWEASYARKAKAI
Physico‐chemical
properties
protein length:788 AA
molecular weight: 87024,62140 Da
isoelectric point:5,59343
aromaticity:0,11041
hydropathy:-0,26586

Domains

Domains [InterPro]
IPR058003
TTP
1–788
IPR058003
QDH94165.1
1 788
Architecture
TTP
TTP 1-788
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH94165.1
1 788
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9918
Central domain 144 347 205 0,0921
C-terminal 348 788 440 0,2168
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-347
C-terminal
348-788

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoP-Ro103C3lw
[NCBI] 		2591410 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH94165.1 [NCBI]
Genbank nucleotide accession
MN067430 [NCBI]
CDS location
range 23066 -> 25432
strand +
CDS
ATGCCGTTATACACACAAAGCATAAAAAATCTTAAGGGTGGCATTAGCCAACAGCCGGACATCCTGAGGTTCTCAGACCAAGGTGAGCAGCAGATTAACGGCTGGTCGTCTGAGAGTGATGGGCTTCAGAAGCGACCGCCGACCGTCTGGAAGAAACGGCTGGTCACGACTACAGGATCCATCCCGGACAACGCCAAGTTCCACCTGATTAACCGCGATGAGCGGGAGCAGTATTACATCGTGTTCACCGGAAAGGACATCCTCGTGTATGACCTTGAGGGCCGACCGTACAAGGTCTCAGGGGCTACCGACTATGTGAGAACGGACACTCCACGGGACGACATTCGAGTCATCACGGTAGCGGACTACACATTCGTTGTTAACCGCAAGACCACTGTGCTGGCTGGCGATGGGGTAGCATACAGCGGCTATAACATGAAGCACCGGGCGCTAATCAACCTACGCGGTGGTCAGTATGGTCGCAAACTTAAGGTCGGGATTAACGGTGGAGCGATGGTCGAGCATCAGTTGCCTTCAGGTTCTGACGCTAATCTGGACCCACCTCTGGTCGATGCACAGGCAATCGGTGGAGCACTGACGACCTTGCTACAGGCTGCTTATCCAACATATAAGATTGCCCTAGGGTCCGGCTACATCGTGATTGAGGCTCCTGCTGGTGGTGAGATTAAGTCCGTCGAGACTGAGGATGGTTACGCCAACCAGCTAATCAACGCTATCTTGGATACCGTTCAGACAATCTCTAAGCTCCCTCTGGCAGCACCTGACGGCTACATCATCAGGATTCAGGGTGAGACCAATAGCAACACCGATGAGTATTTCGTCCGGTATGATGCTGCCAGTAAGACTTGGCGTGAGACCGTGCAGCCGGGGACCATTACCGGATTCAACGCTGGGACCATGCCTCATGCCTTAGTCCGACAGGAGGATGGCAGCTTTGAGTTCAGGGCGCTCGACTGGTCAGAACGTGGAGCAGGTAACGAGGACACTAACCCGATGCCGAGCTTCGTGGACAACAAGATTAACGATGTGTTCTTCTATCGTAATCGCTTGGGGTTCCTCTCTGGAGAGAACGTCATTATGTCCCGGTCAGCTAGCTACTTTGCGTTCTTCCCTAAGTCGGTGGCTACCCTAAGTGATGATGACCCGATTGACGTAGCTGTGAGTCACCCTCGAATCTCCATCCTGAAGTATGCCGTCCCGTTCGCTGAGCAGTTGCTACTGTGGTCTGATGAGGTGCAGTTCGTGATGACCAGCTCTGGGGTCCTGACCTCTAAGTCCATCCAGCTTGACGTAGGCTCTGAGTTCGCTGTGAGCGATAACGCCCGACCTTTCGCTATTGGACGCTCGGTCTACTTCTCTGCTCCGCGTGGCTCGTTCACCAGCATTAACCGCTACTTTGCGGTGGCTGATGTCTCAGACGTGAAGGATGCCGACGACACGACAGGCCATGTGCTGTCCTACATTCCAAACGGAGTGTTTGACATCCAAGGGTCCTCGACTGAGAACTTCATCACGGTGTCTACCTCAGGTGCCAGCAATAAGTTGTTCGTCTATAAATTCCTGTTCAAGGATGGCGTACAGCTTCAAGCCTCTTGGTCCCACTGGGAGTTCGGGAAGGACGAGAAGATTATGGCCTCTGGCTGCATCGGGTCTACCATCTACATCGTGCGCAAGCATAAGTACGGTACTGACTTGGAGAAGCTGGAGTTCATCAAGGAGGCCGTGGACTTCGCTGGAGAGCCGTACCGCCTGCACTTTGACTGTAAGGCATCCATGATTGTGGACTCTACGGCGTTCGACTCTGCGTCCTACCGGACCGTGCTGGACGTCAGTGTTGCCTACGGTGGTGAGACCCCGGCTGAAGGCGTCTACGCCATCGCTGACTCAGCGGGGCGCTTTGTGGTCCTGCCTAACACTGACTGGGCGGCTAGTCGCGTGGTGTCTGTGAATGGTAACTGGACCGGGCAGATTTTCATTGGTCGAGTCTATAAGTTTACTTACGCCTTCTCTCGGTTCCTCATTAAGTACGAGGACCAGAATGGCACAGTGACAGAGGACTCTGGTAGGCTGCAACTTCGGAGAGCTTGGGTCAACTACCAGCACACCGGGGCGCTGACCATGAAGGTTTCCAACAACCAGCGGGAGTTCGTGAACGTGTTGAATGGCTATAAGTTGGGAGACCAAGAGATTGGTCGGATTAACATCGGAGACGGTCAGTTCAGATTCCCTATGAATGGGGACGCTAAGCAGACCAGATTGACGCTTGAGTCCGATGCTCCCACCCCATTGTCCGTTGTAGGCTGTGGCTGGGAGGCCTCTTACGCACGGAAAGCGAAAGCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5f142bf423e6ba4bd0cdbe59d411e67d1506b52e2295e72595be0ad7d76958e7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3253
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence of coliphage lytic against STEC O103 isolated from non-fecal compost Liao,Y.-T., Zhang,Y., Lavenburg,V.M., Salvador,A. and Wu,V.C. 2019-02-28 — GenBank