Protein

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Genbank accession
YP_010650137.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKQNLNVGNVVDDGTGDYLRKGGLKLNNNFDELYYQLGDGSFPHAAGAWKTYSATQGAVLAANFGRSYALNTTSGRITVNLPKGTIDNYNYVIRLRDVFGTWQRNPVRIVPAAGDTIKGSPNAVEINRNFADLELVYCSPGRWEYIKNKSIDRIDNNDIATVATQEFIATQGQRDFMNIFSAHDYNPTNLKVFHRGNLLFYGKDNVFDPVNAEVGSPVPGNSTALQAYDGKNIRLRNACNEGDTVIVVSYMDGLGQWRSSYNRRQVRVLDSKYTNKTTINGSVIVDDLENKKVFTMAELGVTPDQPVNPNAVELSINSVLQYQAGTAGLPVFRCEGADTEDADDCYALGGQWVESATDFLFDSGPDGIIVEEVRFDKPLEHGDIITLVWYNNNIGTTLELEEILLETDSRYVSGMDTVNITGDVRITDVNNPFWPNVEPAAPTEFQPSTVPAIFDLVYPIGSVYENTVNPNNPSTYMGFGLWKRLEGTVLVGWSSSPGTRFNLNNNHLDTTGKQQSTAGGTGGNDDLTLKAGQIPMLRTDDKVLVVDPNGPIVVGGCQFDPDASGPAYTKYREAQATINKENIIDPASIDIMNPYITVYRWMRVA
Physico‐chemical
properties
protein length:605 AA
molecular weight: 66627,45670 Da
isoelectric point:4,69242
aromaticity:0,09587
hydropathy:-0,36628

Domains

Domains [InterPro]
IPR034695
Unmapped
1–605
IPR034695
IPR036240
STR
1–236
IPR036240 IPR054430 IPR053827
DC_2238
STR
1–585
DC_2238
IPR008987
ATT
2–152
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–42
G3DSA:1.20.5.960 IPR027411
YP_010650137.1
1 605
Architecture
ATT
STR
ATT
ATT 1-268 | STR 269-452 | ATT 453-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010650137.1
1 605
Domain Start End Length (AA) Confidence
N-terminal 1 330 330 0,9360
Central domain 331 529 200 0,1520
C-terminal 530 605 75 0,9235
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-330
Central
331-529
C-terminal
530-605

Taxonomy

  Name Taxonomy ID Lineage
Phage Kosakonia phage 305
[NCBI] 		2863193 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kanagawavirus
Host Kosakonia cowanii
[NCBI] 		208223 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010650137.1 [NCBI]
Genbank nucleotide accession
NC_070776 [NCBI]
CDS location
range 93753 -> 95570
strand +
CDS
ATGAAACAAAATCTTAATGTAGGTAACGTTGTAGATGACGGTACCGGTGATTATCTGAGAAAAGGTGGTCTTAAGCTTAATAATAACTTTGACGAGTTATATTATCAATTAGGCGATGGCTCATTCCCTCACGCCGCAGGCGCATGGAAAACATATTCTGCTACACAAGGTGCTGTATTAGCGGCTAACTTTGGTAGGTCATATGCTTTGAATACTACTAGTGGTCGTATTACCGTAAATCTTCCTAAAGGTACTATTGATAACTATAACTATGTTATTCGTCTGAGAGATGTATTCGGTACATGGCAACGCAACCCAGTTAGAATAGTTCCTGCGGCTGGTGATACCATTAAAGGTTCTCCTAACGCAGTAGAAATTAACAGAAACTTTGCCGACCTAGAATTAGTTTATTGCTCGCCGGGACGTTGGGAATATATCAAGAACAAATCAATCGACCGTATTGATAATAATGATATCGCTACAGTAGCAACTCAAGAATTTATTGCCACACAAGGACAAAGGGATTTCATGAACATCTTTTCTGCTCATGATTATAACCCTACGAACTTGAAAGTTTTCCATCGTGGTAACTTATTATTCTACGGTAAAGATAACGTTTTTGACCCTGTCAATGCTGAAGTAGGTTCTCCTGTTCCTGGTAATTCAACTGCACTGCAGGCATACGATGGCAAAAATATAAGACTTCGTAACGCATGTAATGAAGGCGATACTGTTATTGTTGTGTCTTATATGGATGGTTTAGGCCAATGGCGATCTTCATATAACCGTAGACAAGTCCGTGTTCTTGATTCTAAGTATACAAATAAAACTACTATAAATGGTAGTGTTATTGTTGATGATTTAGAAAATAAAAAAGTTTTCACCATGGCTGAATTGGGTGTTACTCCTGACCAACCTGTGAACCCTAATGCGGTTGAATTGTCTATAAACTCTGTTCTTCAATACCAGGCAGGTACAGCAGGTTTACCTGTATTCCGTTGTGAAGGCGCCGATACTGAAGACGCAGATGACTGTTATGCTTTGGGTGGACAGTGGGTTGAATCCGCTACTGATTTTCTTTTTGATTCAGGTCCAGATGGTATTATTGTTGAAGAAGTTAGATTTGACAAACCTTTAGAACATGGCGATATTATCACTTTAGTTTGGTACAACAATAATATTGGAACCACACTAGAATTAGAAGAAATCTTATTAGAGACCGATTCTAGATATGTTTCCGGCATGGATACGGTTAATATCACAGGGGATGTCCGTATCACAGATGTTAATAATCCATTCTGGCCTAACGTTGAACCTGCTGCTCCTACAGAATTCCAACCAAGTACGGTACCAGCTATTTTCGATTTAGTCTATCCTATTGGAAGTGTTTACGAAAATACTGTGAACCCTAATAACCCTTCTACTTATATGGGCTTTGGTCTTTGGAAAAGATTAGAAGGAACTGTTTTAGTAGGTTGGTCTTCATCTCCTGGTACTAGGTTTAACCTGAATAATAACCACTTAGATACTACAGGAAAACAGCAAAGCACTGCCGGTGGTACTGGCGGTAATGATGATTTGACTCTTAAAGCAGGTCAAATTCCTATGCTTAGAACCGATGACAAAGTTCTAGTCGTGGACCCTAATGGTCCTATTGTGGTTGGTGGGTGCCAATTTGACCCGGATGCATCAGGTCCTGCTTATACAAAATATCGTGAAGCTCAAGCTACAATCAATAAAGAAAATATTATTGACCCTGCTAGTATTGATATCATGAACCCATATATAACCGTTTATCGTTGGATGAGGGTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
246f0b31dd81056a629a6d13e4bfe2c55bfcd083abefe2a07d661bb7f7836967
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6120
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Viruses That Lyse Plant and Human Strains of Kosakonia cowanii Petrzik,K., Brazdova,S. and Krawczyk,K. 2021 — GenBank