Protein

View in Explore
Genbank accession
YP_009275308.1 [GenBank]
Protein name
YomR-like protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TF
Evidence RBPdetect
Probability 0,81
Protein sequence
MSSQLKKVNYGDPFLEYTNTINDMVDFLSEYENEMEDHLNDTDNPHEVTKQQIGLENVDNVLQASKEEFDQLQNTVNGQQDLINYLTEEVDSKAPKTSLDSLENSINSVINGLNLKANSEDLNSLEALVSQHSLDISSIVSELDTKADTISVSSLSNDLVSHTENTSNPHNVTKQQIGLGDVENVLQASKQEFDDHVEDYEQFKASISGAMEGDFSEMYEELQHHKQNKSNPHQVTKTQIGLGEVENVLQASKQEFDSHLGDTSNPHGVTKQQVGLGNVSNVLQASNEDFQAHVIDYGQFKLSTENDLNNFDQHLQNSNNPHNVTSSQVNVLPENAFTMDSSPSDYPIGITSFMVTGTGWSIPLAVSNVSGTVVTTRLNNIRIVQYFFRLGNISASRQVFIRWGYEGSWSDWLEIESVQGAQSKVSAHANLTNNPHNVTSSQVNVRDTGWAADTPYDQLPKGITVTQIPSSSGYPLANGTLITNNISQFRCNQILFSHSQQTSTRMFFRIYHQDSGWSGWAEIENTQSAQQKADQAEQNAKDASLPRTGGTVTGTVNIEEGDPSPLKIKRTDSNANISIEYQLDGMSRFLGFDENGDLKVGDSQNLTGSGQFIVTENGDYTNLRARATTKTDVGLGNVENYGIATQAEAQAGDVSNKYMTPLRDRQAFDQHIRSTTISSAWDSSVVRSLGSKGSDGIVHYILLCRMGIFSKTTGVISGTRATSGNNANGLFLVEASHSTSSNSSAQVIALQSQVSGISLVTLTHNGQDYIALRFNRTQFQEYNTFLFRGEATHLNLIKLVEESEVSNVANYNGGNARDVTILGSNGLSINGKLSENIVQQGSNANGYFIRYDSGFQVCWGNPFSLSTDIIINANDPNLYRSESTYWTYPALFNDDYPVTVVGSFSAINRVVGTTGPTSGGGVFVRGYYFGRNPSESAFAVRVIAIGRWK
Physico‐chemical
properties
protein length:949 AA
molecular weight: 104132,76710 Da
isoelectric point:4,80292
aromaticity:0,08114
hydropathy:-0,48788

Domains

Domains [InterPro]
DC_0782
STR
8–106
DC_0782 DC_0782 DC_1105 DC_0857
Coil
Unmapped
55–82
Coil DC_0943 DC_0782
DC_0782
STR
80–216
DC_0782
YP_009275308.1
1 949
Architecture
STR
STR 8-949
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009275308.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 557 557 0,9947
Central domain 558 756 200 0,1467
C-terminal 757 949 192 0,8596
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-557
Central
558-756
C-terminal
757-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Shbh1
[NCBI] 		1796992 Uroviricota > Caudoviricetes > Herelleviridae > Shalavirus > Shalavirus Shbh1
Host Bacillus sp.
[NCBI] 		1409 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009275308.1 [NCBI]
Genbank nucleotide accession
NC_030925 [NCBI]
CDS location
range 98738 -> 101587
strand +
CDS
ATGAGTTCTCAACTAAAGAAAGTTAACTATGGAGACCCGTTCTTAGAGTATACTAACACGATAAATGACATGGTGGATTTTCTAAGTGAATACGAGAATGAGATGGAGGACCACTTAAATGACACAGATAACCCTCATGAAGTCACTAAACAGCAAATAGGTCTAGAGAATGTTGATAATGTACTTCAAGCTAGTAAGGAAGAATTTGATCAGCTTCAAAATACAGTAAATGGGCAACAGGACCTTATTAATTATTTGACTGAGGAAGTAGACTCTAAAGCGCCTAAAACCAGTCTAGACAGTCTAGAAAATTCAATAAACTCGGTTATTAATGGGTTAAATTTGAAAGCTAATTCAGAAGACTTAAATTCTCTAGAAGCCCTTGTCTCTCAACATTCGTTAGACATATCAAGTATAGTTTCTGAACTAGATACCAAAGCCGATACTATTTCTGTATCCTCTCTTTCTAATGACTTAGTTTCTCATACAGAAAACACTAGTAACCCTCATAATGTTACAAAGCAACAAATAGGTTTAGGAGACGTAGAGAATGTACTACAAGCTTCTAAACAAGAATTTGATGATCATGTTGAAGATTACGAGCAGTTTAAGGCTTCCATTAGCGGTGCTATGGAAGGAGACTTCTCGGAAATGTACGAGGAATTACAACACCACAAACAGAATAAGAGCAATCCTCACCAAGTAACAAAAACTCAAATAGGGTTAGGAGAGGTAGAAAATGTATTACAAGCCTCTAAACAAGAATTTGATAGTCATTTAGGAGATACAAGTAATCCTCATGGAGTTACTAAACAGCAGGTAGGACTAGGGAACGTTTCAAACGTACTTCAAGCATCTAACGAAGATTTTCAAGCTCATGTTATTGATTACGGTCAATTTAAATTATCTACGGAGAATGATTTAAACAACTTTGATCAACATCTGCAAAACTCGAATAACCCCCATAATGTGACTTCTAGTCAAGTTAATGTTTTACCTGAAAATGCTTTTACTATGGATAGTAGTCCTAGCGACTACCCAATAGGGATAACTTCTTTTATGGTAACAGGCACTGGGTGGAGTATTCCTTTAGCTGTGTCTAACGTTAGTGGTACAGTTGTTACTACAAGACTTAATAATATTAGAATTGTGCAATACTTCTTTAGGCTTGGGAATATCTCAGCTAGTAGACAAGTTTTTATTCGTTGGGGCTACGAAGGCTCATGGTCAGACTGGCTTGAGATAGAGAGCGTTCAAGGGGCGCAATCTAAAGTAAGTGCTCATGCAAACTTAACGAACAACCCCCACAATGTGACTTCTAGTCAAGTTAATGTAAGAGATACAGGTTGGGCAGCAGATACACCCTACGATCAACTACCTAAAGGAATAACAGTTACGCAAATTCCTAGTAGTTCTGGTTATCCTCTAGCTAATGGAACACTGATAACGAATAATATATCTCAGTTTAGATGTAATCAAATTTTATTTTCTCATAGCCAACAAACATCCACTAGAATGTTTTTCCGAATTTACCACCAAGATTCAGGATGGTCTGGGTGGGCTGAAATAGAAAATACGCAAAGCGCACAACAAAAAGCAGACCAAGCCGAACAGAATGCTAAAGATGCTAGTTTACCTCGGACAGGGGGAACTGTGACTGGAACTGTAAATATTGAAGAAGGGGACCCCTCTCCATTAAAAATTAAACGAACAGATTCTAATGCAAACATTTCTATAGAATACCAGTTAGATGGCATGTCTAGATTTCTAGGGTTTGATGAGAATGGTGATCTTAAAGTAGGAGACAGCCAAAACTTAACCGGAAGCGGTCAATTTATTGTTACCGAAAATGGCGACTATACTAACCTGAGAGCGAGAGCAACGACAAAGACAGATGTCGGTCTCGGAAATGTCGAGAATTACGGTATAGCAACTCAGGCGGAAGCACAAGCAGGTGATGTATCTAATAAATACATGACCCCGTTACGAGATAGACAAGCATTCGATCAACATATAAGGTCTACGACTATAAGTAGTGCATGGGATAGCTCAGTTGTGAGATCATTAGGATCTAAAGGATCTGATGGGATTGTTCATTATATTCTCCTGTGTCGAATGGGTATTTTTTCTAAAACAACAGGGGTTATTAGCGGTACAAGAGCTACTAGCGGAAACAATGCAAATGGATTATTTCTTGTTGAAGCTTCCCATAGCACCTCTAGTAACTCGTCTGCGCAAGTGATCGCTCTTCAATCCCAAGTATCAGGTATATCTTTAGTCACATTAACTCATAATGGTCAGGATTACATTGCTCTACGTTTTAATAGGACTCAATTTCAAGAGTATAATACGTTCTTATTTAGAGGGGAAGCTACACACTTAAATCTAATAAAATTAGTTGAGGAGAGTGAAGTAAGTAATGTAGCCAACTATAATGGTGGAAATGCTAGGGATGTAACTATTTTAGGATCTAATGGTTTATCTATAAATGGAAAATTGTCTGAGAATATCGTGCAACAAGGTTCAAATGCGAACGGATATTTTATTCGATATGATAGTGGATTTCAGGTATGTTGGGGGAATCCTTTTTCCTTAAGTACAGATATTATAATTAATGCCAACGACCCTAACTTATATCGAAGTGAGTCTACTTATTGGACTTACCCCGCCCTGTTTAACGATGATTATCCGGTAACTGTTGTTGGTTCCTTTTCCGCAATAAACCGAGTTGTAGGTACAACTGGACCGACTAGTGGAGGGGGAGTATTTGTACGAGGATATTACTTTGGGAGAAACCCTAGTGAATCAGCTTTTGCGGTTAGAGTTATAGCCATTGGTAGGTGGAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
54240692d1a3905d39cf76651df3762dbf9caa66c1420685260783a33daac967
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6356
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of bacteriophages from East Africa Rift Valley soda lakes van Zyl,L.J., Nemavhulani,S., Cowan,D.A. and Trindade,M.I. 2016-12 — GenBank