Protein

View in Explore
Genbank accession
XDF89789.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAVAGRKSGSSEQRNPVESPDSLHSKAEVRILLALGEGPWPDIPASELPKRVLLDGTPIQNQDGTFNMEGVKLDFRPGTEDQTYIPGVPGVESETGVGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYSTVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISLLSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDDRIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNASVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQMGGRVERDSTGRTIYLDRAISDVVAIGDTIINRAIGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSGVETIEGRAGDVPAIPLFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSLNADGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWTVGESSTDVSDISDAIFQDIQKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKAQIDEEVTSQITALQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGLITANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDTGVRSYVNFLADQFAMLINVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 127129,12460 Da
isoelectric point:4,83696
aromaticity:0,07719
hydropathy:-0,19871

Domains

Domains [InterPro]
DC_0014
STR
1–1166
DC_0014
IPR053171
Unmapped
3–857
IPR053171 IPR015406
IPR055385
ATT
91–218
IPR055385 IPR032876 IPR003961
IPR013783
STR
629–719
IPR013783
IPR036116
STR
642–708
IPR036116
XDF89789.1
1 1166
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-218 | STR 219-342 | ATT 343-503 | STR 504-1166
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDF89789.1
1 1166
Domain Start End Length (AA) Confidence
N-terminal 1 502 502 0,9456
Central domain 503 1109 608 0,0554
C-terminal 1110 1166 56 0,5120
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-502
Central
503-1109
C-terminal
1110-1166

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Taid
[NCBI] 		3158139 Uroviricota > Caudoviricetes >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDF89789.1 [NCBI]
Genbank nucleotide accession
PQ008975.1 [NCBI]
CDS location
range 18902 -> 22402
strand +
CDS
ATGGCAGTAGCGGGAAGAAAAAGCGGTTCATCAGAGCAAAGAAATCCGGTTGAGTCGCCGGATAGTCTGCATTCTAAGGCTGAGGTGAGAATTCTTCTCGCATTGGGTGAGGGGCCGTGGCCTGATATTCCTGCTAGCGAATTGCCTAAGCGGGTATTGCTCGACGGCACGCCTATCCAGAATCAGGATGGCACTTTCAACATGGAAGGGGTTAAGCTTGATTTTCGGCCAGGGACTGAAGACCAGACTTACATTCCTGGCGTGCCTGGCGTTGAGTCTGAAACTGGCGTCGGCGTAGAACTGAAATACGGTGAAGGTGCCGCGTGGGTTCGTCAGATATCCAACACGCAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTTCAGCAACTGGATAACGGTGACCGCGTCGGCGCGGTAGTTGATTACCGGATTGATCTGGCTGTCGGAGGCGGTTCGTATTCAACCGTTGTTAACGGGAAGTTTGAGGGGAAAACGACAACGCTTTACGAGCGTGACCATCGCATTGATTTGCCCGCGTCAAGCACTGGCTGGCGTGTCCGTGTCGTTCGACTGACGCCGGATTCAACAACTGACATGCTGGTTAGTCAGACGCAGATCCAAGCTATCACGGAAATCGTTGATGTTAAGCTGACGTATCCGCATACCGTACTATTGTTCGCATCATTCGATGCGAAATTGTTCTCAAATATCCCGCCGATTTCTCTATTGTCAGAAGGTCGCGAGGTGCAGATACCGACGAATTACGATCCGGTTGCGAAAACGTATTCAGGAACATGGAACGGTGAATTTAAACGTGCATGGACTGATAACCCAGCATGGGTGATGTTCGACGCTGTGACGAATGAACGGTTCAGTATCGGTGACAAAATCCCAGCTTTCCTCATGGATAAATGGCAGTTATACAGGATTGCACAGCGTTGCGACGACCGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATCCGCGACCTTTGCGCGATATTCTGCGGCATGTCGTACTGGGGTAATCAGATGCTGAATTTTATCAGCGATTCCCCATCAGATGCCGTGCAAGTGCTGACAAACGCCAGCGTGGTTAACGGACAGTTTGTTTACAAAGGCGGCAGCGTCAAAAACCGCCGCTCAGTTGGGATGGTCAGTTACGACGATCCGGTAAACCACTACCAATCAAATGTTGCCGTTGTTCCGGTTCAGGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGCTATCTGGTATCGGCTGCACTCGGTTGTCAGAAGCGCAGCGCAAGGCGCGTTACGGCGTGCTCACAAACGCGATGGATGAACAGGTTTCATTCGTCATTGGCATGGAAGGGATCGAGTTCATGCCGTGTGATGTGGTTGCGATTGCTGATGCTGAGTTCAGCGGTGCGCAAATGGGCGGACGTGTTGAACGTGATTCTACCGGACGCACAATTTACCTTGATCGGGCAATATCTGACGTTGTTGCAATCGGCGACACTATCATTAATCGTGCCATCGGACAGAAAGAGGCGGAACGCCGGACTATTGCCGCTATCGCGTCAGATCGGCGCAGCGTTACTGTTAGCGCCGACATTCCTACAGGCATTGCCGCATTCACGCCGTGGGTCATTGATTCGGCTAATCTGGCCGTTCGCATGTTCCGCATCACGTCAGTAAAATGGAATGAGGCTGACAATACGTTTTCATGTTCCGGTCTGATATACAACGCGGACAAATATGATGCGGTGGATTCCGGAGCTCGTCTTGATGATCGCCCTGTTTCTCTCATTCCATCAGCGATTGTGCCAGCGCCGACTAACCTTGCTATGGAACCGTATTACGTCATGAATCAGGGCGTGCGCACGGTGAGCATTTCTTTTACGTGGGATCGCGTTGACAAGGCAAGCCATTACGAAATGCAGTGGCGGCGAGACAATAACGACTGGATTAACGTACCGCGCCAGACGACGATGATCTACGATTTGAACGGCGTGTTTTCTGGTGACTATCAATTCCGCGTGCGGGCAATATCCAACGTTGGTGAAATATCATCGGGCTGGGCAACGTCCGGTGTTGAAACGATTGAAGGTCGTGCAGGTGATGTTCCAGCTATCCCGTTATTCACAACCACGGCGCTGGTGTTCGGCGTGCGGCTGGACTGGTCATTCCCGAACGACGCAGAGGACACGAACAAAACCGAGATCCGCTACTCACTGAATGCAGATGGCACCGATGCAATGCATCTTTCTGATGTTGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGCCAGCGATTCTATTACAGCGCCAGATTGGTGGACAGGCAAGGAAACATCGGGCCGTGGACGGCTTGGACGGTTGGTGAATCCAGTACGGATGTATCAGATATTTCCGATGCCATATTTCAGGACATCCAGAAAACTGACGGTTGGAAAGACCTGATCGGCGGAATGGGTGACGCGGCGACAATTTCCGCTGATGCTATGCGTTCAACCATCGAAACCGCTAAAGCGCTGCTGAAAAACACCTACGCCGATCTAGCAGAAACTCGCCGTTGGTTCGCGGAGAACGGCGCACGCAAGGCAGAAATCACCGAAACGCGACTGGTTATTGCTGACGAAGTTCAGGCGCTGGCATTGCAGATGATCGAACTTAAAGCGCAGATTGATGAAGAGGTAACCAGCCAGATAACCGCCCTCCAACAAACGGTATCCACGCTTGCCGAAACGACCGCGCAGGATATCACTTCCCTTGAGTCTCGCATGGGGTCGGCTGAATCAGGCGTTAGCGCGAACGCTGGCGCGATTTCAGGACTGACCACTACTGTGACTAATCAGGGCGGGTTAATCACCGCTAACAGCCAGTCTATCGCGCAGATGACGGTGACTATCAACGGGTTTGAAACGTCGATAACCGACATCACCAATGTCACTAACGACATTAACGGCAACCTGAGCGCTTACCGGACGCTACGCATCAAGGCCAACGTTAACGGTGTGGATTATGTCGCCGGAACGACAACGGGCATTCAGAACACGGACACGGGCGTTAGATCGTATGTTAACTTCCTTGCTGACCAGTTCGCGATGCTGATTAACGTGAATGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTGCGTTCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATAGCCGACAGTATCCAGTCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGATTTTGCCAATGGCACATTAGAGCTTAACGGTAATGAACCAGGTCAGGGAAGAAAAACGATAGGTAATATTCGCGATGTGGTATACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0aab4feb02f12e3156a4c70c800d2cac84b6901a4ebf0d7b055eba03ec04a59a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7823
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50