Protein

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Genbank accession
YP_003734385.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATLKSIQFKRSKTPGAKPTAAQLDEGELAINLRDRTIFTKSDQGQIIDLGFAKGGQVDGDVTINGRLTLEGELVQTSTAGMRTEGSITAPVFRASKGSFYSRASNDTANAHLWFENTNGSERAVLYAKPQLENEGVITMRVRQGTAAGAQNSEFHFISNDGGIFQARKLTALTSISTPTISVNLINHDSKAFGQYDSQSLVQYVYPGTGETNGVNYLRKVRAKSGGTMWHELCTAQLGQADELSWWTGNTPSSKQYGIRNDGRMAGRNSLALGTFTTDFPSSDYGNVGVMGDKYLVLGDTVTGLKYIKQGNFDLVGGGYSVASVTSDGFRGTSKTIFGRSNDQGLTWLLPGQNSSMVSIRTEIDGNNSGDGQTHLGYNSNGKLYHYFRGTGRVAISMAEGMIIEPGILNIKTGVNELNLRADGTVSTTQRLQINNGLVLNSNNNTSALAFTAPTAVDGTKTLNWDSGTRAGQNKNTVILKAWGNSFNAEKGNRETVWEVSDSQGYYFYAQRTNPAVAGGVGPVNFKFNGTVETGHIIGLGNISASGTGSFGGNVTMTNGLFVQGGASINGQVKMGGTADALRIWNAEYGMIFRRSETGSSASLHLIPTLQNAGENGGISDLRPLSINLANGTVIMGNKSAGYGPLFTVDNVSKFVQTDCRLRVNMDSDAIVVNASSQAASNFIQGRKADVTKWYLGIGDGGNVVRLHNYTYSHGIALNSDTVDITKPLKIGSDIRIGTDGNIIGSATLDNFKNLNSTLDHKVNMGGWAGGATTGWYKFATVEIPQSTGTASFKISGGSGFNFKSYGQASIAEIVLRTGNNNPKGLNATLWNRTSEAISQVASVNTSEDIYDIYVYLGGYSNSLVVEYTCSSNSKVTVVGMDSGVQPLVETLPEGHVVGKSVRMLNNIDGMFAAGESDIVTRGEYVTNNQKGMRIKSSGNDIGSNAALIRNDGGSFYILVTDKNTAENPNATDGLWNGLRPFSINMADGRVGMNHGLNITGGGLNVTGGNTNLGNITSRVVSSARAPGGWADNSDSTKSKITFMADHGDLSNSGSYYPIVGAWSNYGSAGYRQTFEFGWVGTGTTAGWRDGIIRIRGDNATGQQARWRFTMDGLLDCPGKVQMPQTSAFGVNTTNSLGGSSITFGDSDTGIKQNGDGLLDIYANNIQVFRFQNGDLYSYKNINAPNVYIRSDIRLKSNFRPIENALEKVEQLDGLIYDKAEYIGGEAVQTEAGVIAQSLEEVLPEAICEAEDIKGNKVLTVSTQAQVALLIEAVKTLSAKVRELEAKLN
Physico‐chemical
properties
protein length:1289 AA
molecular weight: 137533,42460 Da
isoelectric point:6,45364
aromaticity:0,08068
hydropathy:-0,30861

Domains

Domains [InterPro]
DC_1954
STR
1–1289
DC_1954
G3DSA:6.20.80.10
STR
670–727
G3DSA:6.20.80.10 IPR030392
IPR048388
ATT
671–751
IPR048388 IPR030392 Coil
YP_003734385.1
1 1289
Architecture
STR
ATT
STR
STR 1-670 | ATT 671-751 | STR 752-1289
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003734385.1
1 1289
Domain Start End Length (AA) Confidence
N-terminal 1 704 704 0,0357
Central domain 705 915 212 0,5949
C-terminal 916 1289 373 0,8123
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-704
Central
705-915
C-terminal
916-1289

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage IME08
[NCBI] 		698728 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003734385.1 [NCBI]
Genbank nucleotide accession
NC_014260 [NCBI]
CDS location
range 157862 -> 161731
strand +
CDS
ATGGCTACTTTAAAATCGATACAATTTAAAAGAAGTAAAACACCAGGAGCCAAGCCTACTGCAGCTCAGTTAGATGAAGGCGAACTGGCTATTAACTTGCGTGACCGCACTATTTTTACTAAGTCAGACCAGGGACAGATTATTGATTTAGGCTTTGCTAAAGGTGGCCAGGTTGATGGTGACGTGACTATTAACGGCCGTTTGACTTTAGAAGGCGAACTTGTCCAAACTAGTACTGCGGGTATGAGAACTGAAGGTAGTATTACCGCACCTGTCTTCCGAGCTAGTAAGGGCTCATTTTATTCTAGAGCATCTAATGATACTGCTAATGCTCATTTGTGGTTTGAAAATACCAACGGTTCTGAACGCGCTGTATTATATGCCAAACCACAGCTTGAAAATGAAGGCGTAATTACAATGCGTGTTCGACAAGGAACCGCAGCCGGCGCACAGAATTCAGAGTTCCATTTTATTTCTAATGATGGTGGTATCTTCCAGGCACGCAAATTAACTGCTTTAACTTCTATTAGTACACCAACTATTAGTGTTAATTTAATTAATCATGATTCTAAAGCCTTTGGACAATACGATTCACAATCATTAGTTCAGTATGTTTATCCAGGCACCGGTGAAACGAATGGTGTAAACTATCTTCGTAAAGTTCGTGCTAAATCCGGCGGCACCATGTGGCACGAGCTTTGCACCGCCCAATTAGGTCAAGCTGATGAACTGTCTTGGTGGACAGGTAATACTCCGTCATCTAAACAATATGGCATTCGTAATGACGGACGAATGGCAGGCCGTAATAGCCTTGCATTAGGTACATTCACTACAGATTTCCCGTCTAGTGATTATGGTAACGTCGGTGTAATGGGCGATAAGTATCTTGTTCTAGGTGACACTGTAACTGGTCTGAAATATATTAAACAAGGTAATTTTGATTTAGTAGGTGGAGGTTATTCTGTCGCTTCTGTTACTTCCGACGGCTTCCGTGGGACTAGTAAAACCATATTTGGCCGTAGTAATGACCAAGGTCTTACTTGGCTTCTGCCTGGCCAGAACTCTTCTATGGTTTCTATTAGAACCGAAATAGACGGTAATAACTCTGGGGATGGTCAAACCCATTTAGGTTATAATTCTAATGGTAAACTTTATCATTATTTCCGTGGTACAGGTCGTGTAGCCATTTCTATGGCAGAAGGCATGATTATTGAACCGGGTATTTTGAATATTAAGACCGGGGTCAATGAACTGAATCTTAGAGCAGATGGCACAGTTTCTACCACCCAACGTCTGCAAATTAATAATGGCCTTGTTCTTAATTCTAATAATAATACTTCAGCCTTAGCTTTCACTGCTCCTACAGCCGTTGACGGGACAAAAACCCTTAATTGGGATTCAGGTACTCGCGCAGGTCAGAACAAAAACACTGTTATTCTTAAAGCATGGGGTAACTCATTTAATGCTGAAAAAGGTAATCGTGAAACGGTATGGGAAGTTTCAGATTCACAAGGTTATTATTTTTATGCCCAACGAACCAATCCAGCTGTTGCTGGTGGTGTGGGACCTGTTAATTTTAAGTTTAACGGAACTGTTGAAACAGGCCATATCATAGGCCTTGGTAATATAAGTGCCTCTGGTACAGGTTCTTTTGGTGGCAATGTTACCATGACTAATGGCCTGTTTGTCCAAGGTGGTGCTTCAATTAACGGACAAGTTAAAATGGGTGGTACCGCTGACGCATTAAGAATTTGGAATGCCGAATACGGTATGATTTTCCGTCGTTCAGAAACAGGTTCTTCTGCTTCATTACATCTTATTCCTACCCTTCAGAACGCTGGTGAAAACGGTGGAATAAGTGACCTTCGCCCGCTTTCCATTAATTTGGCTAATGGCACGGTTATAATGGGTAATAAAAGTGCTGGATATGGTCCACTTTTTACAGTAGACAACGTAAGCAAATTTGTTCAGACCGACTGTCGACTGCGTGTTAATATGGATTCCGACGCCATTGTGGTAAATGCTTCATCCCAGGCGGCATCTAACTTTATCCAAGGACGTAAAGCCGATGTTACAAAATGGTATTTAGGTATTGGCGACGGTGGTAACGTTGTTCGTTTACATAACTATACTTATTCACATGGTATTGCATTAAACTCTGATACTGTTGATATAACCAAGCCTCTTAAAATTGGTTCTGATATTCGTATTGGTACCGATGGTAATATTATAGGCAGTGCTACTTTAGATAACTTTAAAAACCTGAATTCAACATTAGACCATAAAGTTAATATGGGTGGTTGGGCCGGTGGTGCTACTACAGGTTGGTATAAATTTGCTACTGTAGAAATTCCACAATCTACAGGTACAGCATCCTTTAAAATATCAGGTGGTTCCGGATTTAATTTTAAAAGTTATGGCCAGGCTTCAATAGCCGAAATAGTCCTTAGAACCGGTAATAATAACCCTAAAGGCCTTAATGCTACGCTATGGAATAGAACTTCTGAAGCTATTTCCCAGGTTGCTTCGGTTAATACAAGCGAAGATATCTATGATATTTACGTTTACTTAGGCGGGTATTCTAATTCTTTGGTAGTAGAATATACATGCAGTAGCAATAGTAAAGTAACCGTGGTAGGTATGGATAGCGGTGTCCAGCCTTTGGTAGAAACATTACCTGAAGGTCATGTTGTAGGTAAATCTGTAAGAATGCTGAACAACATTGACGGAATGTTTGCTGCTGGCGAATCGGATATTGTTACACGTGGTGAATACGTTACCAATAATCAAAAAGGTATGCGTATCAAATCCAGTGGTAATGATATAGGTTCTAATGCTGCTTTGATTAGAAACGACGGTGGAAGTTTTTATATTTTAGTTACAGATAAAAACACGGCAGAAAACCCAAATGCAACTGACGGGCTGTGGAATGGCTTAAGACCTTTCTCTATCAACATGGCCGATGGCCGTGTTGGCATGAACCACGGGTTAAATATTACTGGTGGCGGATTAAACGTTACCGGTGGTAATACTAACCTTGGCAATATTACTTCGCGAGTGGTTTCATCCGCACGCGCGCCGGGCGGTTGGGCTGATAACTCAGATTCCACGAAATCTAAAATCACCTTTATGGCAGACCATGGTGATTTATCCAATTCGGGTAGTTATTATCCTATTGTCGGTGCGTGGAGTAACTATGGTTCAGCGGGTTATCGTCAAACCTTTGAATTTGGATGGGTCGGCACTGGTACCACAGCTGGTTGGCGCGATGGCATTATTCGTATACGTGGCGACAACGCTACCGGCCAACAAGCAAGATGGCGCTTTACAATGGACGGTCTTTTAGATTGCCCTGGTAAAGTACAGATGCCACAAACAAGTGCCTTTGGTGTTAATACAACTAACTCACTCGGTGGAAGTAGTATAACATTTGGCGATAGTGATACCGGTATTAAGCAAAACGGTGATGGATTATTAGACATATATGCGAACAATATACAAGTATTCCGTTTCCAAAATGGTGATTTGTACTCGTATAAAAATATAAATGCTCCTAACGTTTATATTCGTTCTGATATTCGTTTGAAATCAAACTTCAGGCCTATTGAAAATGCTCTTGAAAAGGTTGAACAGCTCGACGGTTTAATCTATGATAAAGCTGAATATATCGGCGGTGAAGCGGTTCAAACCGAAGCGGGTGTTATTGCGCAGAGCCTGGAAGAAGTATTACCTGAAGCTATTTGTGAAGCTGAAGATATCAAAGGTAATAAAGTTCTAACAGTTTCGACTCAGGCACAAGTTGCTCTGTTAATTGAAGCGGTTAAAACCCTGTCGGCTAAAGTTAGAGAACTTGAAGCTAAATTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e2e4cd5c94628b7cd3198a0034f1d51832b46c9e7d8361726156a0afc285104a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5155
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50