Protein

View in Explore
Genbank accession
QGZ17769.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAQLSTKIKEYCKTNGVSDVDFTKDVMLQDDSDGNGAYIKEWNLDIAQPTSAQLDSYETAGNTSESNAQVDATRRAEYGTWNQQLDEMYHDFDAWKTRVKGVKDNNPKG
Physico‐chemical
properties
protein length:109 AA
molecular weight: 12276,19560 Da
isoelectric point:4,53168
aromaticity:0,09174
hydropathy:-1,01101

Domains

Domains [InterPro]
DC_0890
STR
1–109
DC_0890
IPR019094
STR
11–63
IPR019094
IPR035950
STR
17–65
IPR035950
IPR035950
STR
20–57
IPR035950
QGZ17769.1
1 109
Architecture
STR
STR 1-109
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC026P
[NCBI] 		2686456 No lineage information
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ17769.1 [NCBI]
Genbank nucleotide accession
MN698240.1 [NCBI]
CDS location
range 26869 -> 27198
strand +
CDS
ATGGCACAACTAAGTACAAAAATAAAAGAATACTGCAAAACTAATGGTGTTAGCGATGTAGATTTTACAAAAGATGTCATGTTGCAAGACGATAGCGATGGTAATGGTGCATATATCAAAGAATGGAATTTAGATATTGCTCAACCTACTTCAGCACAATTAGACAGTTATGAAACTGCTGGTAATACTTCTGAAAGTAATGCTCAAGTAGATGCAACAAGACGAGCCGAGTATGGAACGTGGAATCAGCAACTCGATGAGATGTACCACGATTTTGATGCTTGGAAAACAAGAGTCAAAGGTGTAAAAGATAATAACCCTAAAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
17681a602ca11f079303ce1739027d18c171d4834b6a2558cede1560a1aae12d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9673
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank