Protein

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Genbank accession
YP_009140818.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MRAAVIGSIIPWSGPLSGIPDGWIVCDGSLPDARDYPLLVQTIQDTYNAGVSNLGGAFPAYTGQFKLPDLLSGRSLMDIEGAYFSAGGTDNAIDLDPDARGLIEPYIGSNSDLGVQQVYNDVITNVDFEIPLSQRDGYAGAISGNKIVPGEGEKVVYIGGRKLGHQHVSTHSHPGIYETLKATPKNLPGLGVIPYSNMSLKFSYASYDERQAGGGDGEVDEARFSLRGVYKEGFKFEGANQDISSLNSYSGFGSGDFGRMVGRANSENPPVNLSPQQLTHTPVANWGEFRPFPSTPVTGRPQIVADDVIQYGIGGQNIEIPQFQRNFYPDQTAAGAYSTFVSNDGNTFLDDKLQAHAHDPFVIEFDQGSLKPQTRINSVLSIPLDTELDNVSNAGALQINMNTSQPSLTCVYIIRAY
Physico‐chemical
properties
protein length:417 AA
molecular weight: 44900,29080 Da
isoelectric point:4,64849
aromaticity:0,09592
hydropathy:-0,29880

Domains

Domains [InterPro]
IPR037053
ATT
1–70
IPR037053 DC_0344
IPR037053
ATT
1–75
IPR037053
SSF88874
STR
3–65
SSF88874
IPR011083
ATT
7–65
IPR011083
YP_009140818.1
1 417
Architecture
ATT
STR
ATT 1-75 | STR 76-417
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009140818.1
1 417
Domain Start End Length (AA) Confidence
N-terminal 1 105 105 0,5552
Central domain 106 309 205 0,4688
C-terminal 310 417 107 0,2943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-105
Central
106-309
C-terminal
310-417

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014i
[NCBI] 		1493513 Uroviricota > Caudoviricetes > Pantevenvirales > Chalconvirus > Chalconvirus acg2014i
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009140818.1 [NCBI]
Genbank nucleotide accession
NC_027132.1 [NCBI]
CDS location
range 31624 -> 32877
strand +
CDS
ATGAGGGCTGCCGTTATCGGCAGTATCATCCCTTGGAGTGGTCCCCTATCTGGTATTCCAGATGGGTGGATCGTTTGTGATGGTAGCTTACCTGACGCAAGAGATTATCCATTGTTAGTTCAAACAATTCAAGACACATATAATGCTGGTGTTTCCAATTTAGGAGGAGCATTTCCAGCATATACAGGTCAGTTTAAGCTACCGGATCTTCTGTCTGGGAGATCTCTAATGGATATTGAGGGTGCTTATTTTAGTGCTGGTGGAACAGATAATGCTATTGATTTAGATCCAGATGCCCGAGGTTTGATTGAACCATATATTGGTTCCAATTCAGATCTAGGTGTACAACAAGTTTATAATGATGTTATTACTAATGTTGACTTTGAGATTCCTTTAAGTCAACGAGATGGATATGCAGGTGCTATTTCTGGAAATAAAATTGTTCCTGGAGAAGGTGAAAAAGTGGTTTATATTGGTGGAAGAAAACTAGGACATCAACACGTTTCTACTCATTCTCACCCAGGCATTTATGAAACTCTTAAAGCAACTCCTAAAAACTTACCGGGACTTGGTGTTATTCCTTATAGCAATATGTCGTTAAAATTTAGCTATGCATCATATGACGAAAGACAAGCAGGTGGTGGCGATGGTGAAGTTGACGAAGCTCGATTCTCTTTAAGAGGTGTTTATAAAGAAGGTTTTAAATTTGAGGGTGCAAACCAAGATATCTCATCTTTAAATTCTTATAGCGGGTTTGGAAGTGGAGATTTTGGTAGAATGGTTGGTAGAGCTAACTCGGAAAATCCTCCAGTTAATTTATCACCACAACAATTGACACATACACCTGTTGCAAACTGGGGAGAATTTAGACCATTTCCATCTACTCCTGTAACTGGAAGACCTCAAATAGTAGCAGATGATGTAATTCAATATGGAATAGGCGGACAGAATATTGAAATTCCGCAGTTTCAGAGAAATTTCTATCCTGATCAAACAGCAGCTGGTGCATATTCAACATTTGTCAGTAATGACGGAAATACATTTCTAGATGATAAACTACAAGCACATGCACATGATCCATTTGTTATTGAATTTGATCAAGGAAGTTTAAAACCACAAACCAGAATTAATTCTGTATTAAGTATCCCACTAGATACTGAATTAGATAATGTTAGTAATGCTGGTGCATTGCAGATTAATATGAATACATCACAACCCTCTTTAACATGCGTGTACATCATTCGAGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a515bb1ffebcd01689f3640117d516cec37ba6b2c17e74394f33900b8f72eb89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3723
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank