Protein

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Genbank accession
YP_010662483.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MVNVTPISPIVPGDTSVGDSVAKANDVFSRIVEQGQAVNGLLIDVGDKTLLQTSIKTNLVAAINEILVRFNDGFLVESITGLLVNLDTTNKTNLVTAINEVVGNVGDLDTLQSVDKSSIVSAINEILTENAGVGNLQNLSTIDKSNIVSAINELSLSIGSFSNLSGYQDIVSAINEISDDLGDRDELETTVKNNLVVAINEIVSKYELFVAKDGSTAFTGNVDLNNHKVINLSPGTNPNDAVTVAQIPELVKLGDVDSLSTSTKENAVLAINEVVGYIGQLNLLDTTVKTNIVAAINEIVANIDYQDMQTKLSGETLIKFGSSVNSDHDQIFDFRSSAVTGPTSYDLRIVRESGSNGETRIIQNGSGQTFISTNDEINGVIDRVRVNADVVNPFEIYKDGVWVAVATGGASLPLVGGIMTGPIQFDKELGSNNILMDLQQGYGIYSDDVGTYDSSVSRLWIDGPTVGEIHIGPKTTGNLRGVEIRTDRLDITGEIFSTSDITLLSDERVKTEIETIDDSLEKVYAMRGVHYIKDGKFSTGVIAQELEKVAPELVKDAGELKAVNYPQLTAYLIEAVKDLVDQVNDLNRRIITLENNQ
Physico‐chemical
properties
protein length:597 AA
molecular weight: 64170,08660 Da
isoelectric point:4,32604
aromaticity:0,04858
hydropathy:-0,03451

Domains

Domains [InterPro]
DC_1369
ATT
1–75
DC_1369 DC_1369 DC_0811 IPR051577
DC_0811
STR
68–133
DC_0811 DC_1369 DC_0203
IPR030392
CHP
505–555
IPR030392 Coil
IPR030392
CHP
505–590
IPR030392
YP_010662483.1
1 597
Architecture
ATT
STR
ATT
STR
RBD
ATT 1-75 | STR 76-126 | ATT 127-238 | STR 239-432 | RBD 490-597
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL38J1
[NCBI] 		2663232 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus RL38J1 >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010662483.1 [NCBI]
Genbank nucleotide accession
NC_070888.1 [NCBI]
CDS location
range 61503 -> 63296
strand +
CDS
ATGGTTAACGTAACTCCAATTTCGCCTATTGTTCCAGGTGACACTTCCGTCGGTGATTCCGTCGCGAAAGCAAACGACGTCTTCTCCAGAATCGTTGAACAAGGTCAGGCAGTCAACGGTCTCCTTATCGACGTCGGTGACAAGACTCTACTCCAGACGAGTATCAAGACAAACCTCGTGGCTGCGATCAACGAGATCCTTGTTCGCTTCAACGATGGCTTCCTAGTCGAGAGCATCACAGGTCTTCTCGTCAATCTTGACACGACGAACAAGACGAACCTTGTGACTGCGATCAACGAAGTCGTCGGAAACGTCGGCGATCTCGATACTCTCCAGTCTGTCGACAAGTCGAGCATCGTGTCTGCGATCAACGAGATCCTGACCGAGAATGCTGGTGTTGGCAATCTTCAGAACCTCTCCACGATCGACAAGTCAAACATCGTCTCCGCTATCAACGAGCTGTCTCTGAGCATCGGATCGTTCTCGAACCTCTCTGGTTATCAGGACATCGTGTCTGCGATCAATGAGATCTCTGATGACCTCGGTGATCGTGACGAACTGGAGACGACTGTCAAGAACAATCTGGTCGTGGCTATCAACGAGATCGTTTCGAAATACGAACTGTTCGTTGCGAAAGACGGATCAACTGCGTTCACCGGCAACGTGGATCTCAACAACCACAAGGTCATCAACCTCTCTCCTGGCACGAACCCGAACGACGCTGTCACTGTAGCTCAGATCCCTGAACTCGTGAAGCTCGGTGATGTAGACAGCCTCTCGACTTCTACGAAGGAAAATGCTGTCCTCGCGATCAACGAGGTCGTTGGCTACATCGGTCAGCTAAACCTTCTTGACACGACTGTAAAGACGAACATCGTGGCTGCTATCAACGAGATCGTCGCTAACATCGACTATCAAGACATGCAGACCAAGCTGTCTGGAGAGACTCTGATCAAGTTCGGTTCTTCTGTCAACAGCGACCACGACCAGATCTTCGACTTCAGATCCTCTGCTGTTACTGGTCCTACGAGCTACGATCTGCGTATCGTTCGTGAGAGTGGTTCGAACGGCGAGACTCGCATCATCCAGAACGGCAGCGGTCAGACATTCATTTCGACCAATGACGAAATCAACGGTGTCATCGATCGCGTCCGTGTCAATGCTGACGTAGTCAATCCGTTCGAGATCTACAAGGATGGTGTCTGGGTTGCAGTCGCTACAGGCGGTGCTTCACTTCCTCTCGTAGGCGGCATCATGACTGGTCCTATCCAGTTCGACAAAGAACTCGGTTCGAACAACATCCTGATGGATCTTCAACAGGGTTACGGCATCTACTCTGACGACGTCGGAACTTACGACAGCTCAGTCAGCCGACTCTGGATCGACGGTCCGACCGTTGGTGAAATTCACATCGGTCCGAAGACGACTGGCAACCTTCGCGGTGTCGAGATCAGAACAGACAGACTCGATATCACAGGTGAGATCTTCTCGACTAGCGACATCACGTTGCTCTCTGACGAACGAGTGAAGACCGAGATCGAAACGATCGACGATTCGCTAGAAAAAGTCTATGCAATGCGTGGTGTGCACTACATCAAGGACGGCAAGTTCTCCACTGGTGTCATTGCACAGGAACTCGAGAAGGTAGCGCCTGAACTCGTCAAGGATGCCGGTGAACTCAAGGCAGTGAACTATCCGCAGCTCACAGCTTATCTCATCGAAGCTGTGAAAGATCTTGTCGATCAAGTGAACGATCTCAACCGTCGTATCATCACTCTGGAGAACAATCAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aacf2a3a5646a0b79b7e213c7ae8f3e3d810293fbcf88fbe01cf8986351c58d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6722
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL38JI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank