Protein

View in Explore
Genbank accession
QBQ72453.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,71
Protein sequence
MADNLASFKVFCQGGLNTSRDVLSQGETQPGSAVALINYEPAVTGGYRKINGFSNDYGTVTGTGKVLGVCVANGVNDGILACRAPSSGSNYLHYWNTATSAWVTVTTSGSPTMTGVTKVRFTKYNWGSPKVLLTDGINPAATYDGTTYTQITHADAPSAPKFSHVYKNHMFLAGDPSEDTNLYFSAPYNETSFAAADGAGVINVGFPIVAIKSFRDVLYIFGTNNIRKLAGDNISNFVLQEVTDDLGCLASDSVIEIGGDLLFLSQDGLRPISGTDKIGDVNLETVSKDIQSIFTDIVFDIDLEGLNAVVIRQKTQFRYFFAAADSQGIIGGFRQTPNGLQFEYSQMVGITATCSDSGYIGQNEFVIHGDDNGKVHRQEQGFDFDGDNILSIFQTPFYHMQDPEQRKVFYSVATYLRSEGNNDIVMSILYDYEDVDTLNPTNFNLSTEGAAAYYNEAIYNSTAIFDGNPSPVQRTNISGSGKSASIRYVTNSSDASHSIQGIVITFGVGDRL
Physico‐chemical
properties
protein length:512 AA
molecular weight: 55333,63720 Da
isoelectric point:4,63035
aromaticity:0,10938
hydropathy:-0,16543

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72453.1
1 512
Domain Start End Length (AA) Confidence
N-terminal 1 364 364 0,7907
Central domain 365 501 138 0,1438
C-terminal 502 512 10 0,8423
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-364
Central
365-501
C-terminal
502-512

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-1
[NCBI] 		2559280 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72453.1 [NCBI]
Genbank nucleotide accession
MK613343 [NCBI]
CDS location
range 37130 -> 38668
strand -
CDS
ATGGCAGACAATCTAGCATCCTTCAAAGTATTCTGCCAAGGCGGTCTAAACACTAGTCGTGATGTGCTGTCACAGGGTGAGACACAACCTGGTTCAGCAGTTGCTCTAATTAACTATGAACCTGCTGTTACTGGTGGCTATCGTAAGATTAACGGTTTTAGTAACGACTACGGTACAGTTACAGGCACAGGTAAGGTTCTAGGTGTTTGTGTTGCTAATGGTGTCAACGATGGTATCCTAGCTTGTCGTGCACCTTCTAGTGGTTCTAACTACCTACACTACTGGAATACAGCTACGTCAGCTTGGGTTACAGTAACTACTTCTGGCTCTCCTACGATGACAGGTGTAACTAAGGTACGCTTTACTAAGTATAACTGGGGTAGCCCTAAAGTACTTCTTACAGATGGTATCAATCCTGCAGCTACTTATGATGGTACGACTTATACGCAAATAACCCACGCAGATGCACCCAGCGCACCTAAGTTTTCACACGTATATAAAAACCACATGTTCCTAGCAGGTGATCCTAGTGAAGACACGAATCTTTATTTTAGTGCACCTTACAATGAGACTAGCTTTGCTGCTGCTGATGGTGCTGGTGTTATTAACGTAGGCTTTCCTATCGTAGCTATCAAGTCTTTCCGTGATGTGTTGTACATCTTTGGTACTAACAACATTCGTAAGCTTGCTGGTGACAACATCTCTAACTTTGTACTACAAGAAGTTACAGATGACCTTGGATGTCTAGCTTCAGATAGTGTTATTGAAATAGGTGGTGACCTACTATTCTTATCACAAGATGGTTTACGTCCTATCTCTGGTACAGACAAAATTGGTGACGTTAACCTAGAGACAGTATCAAAAGACATTCAGTCTATCTTTACTGACATTGTTTTTGATATTGACCTTGAAGGATTGAACGCAGTAGTCATACGACAAAAGACACAGTTCCGTTACTTCTTTGCTGCAGCAGATTCACAAGGTATCATTGGTGGCTTTAGACAAACACCTAACGGTTTACAGTTTGAATATAGTCAAATGGTAGGTATTACAGCTACGTGTTCTGATAGTGGTTACATTGGACAAAACGAATTTGTAATACATGGTGATGATAACGGCAAAGTTCACAGACAGGAACAAGGTTTTGATTTTGACGGAGATAATATACTAAGTATTTTCCAAACTCCGTTTTATCATATGCAAGACCCAGAACAACGTAAGGTGTTTTATAGTGTGGCTACATACTTACGTTCTGAGGGTAACAATGATATAGTTATGTCTATATTGTATGATTATGAAGATGTAGATACTCTTAATCCTACAAACTTTAACTTATCAACAGAAGGTGCTGCTGCGTATTATAACGAAGCAATATATAATAGTACCGCAATATTTGATGGTAATCCATCACCAGTACAAAGAACAAACATATCAGGTTCAGGTAAGTCAGCATCTATCAGATATGTTACTAATAGCTCAGATGCATCACACAGTATTCAAGGCATAGTGATCACCTTTGGGGTAGGAGACAGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bfb92ec897abce83fb5f6573f46217adf6fc644b7f31c75ba6c91292e3bd64bf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8847
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank