Protein

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Genbank accession
UXD83218.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPSIVPSQVPGPVALNSKVKFNFSSDIQKVYYTVSPELPPVLSEYIAYDGDPATGGSPFIAVVQDGTGNVLYDCSFPKFYNLNYDTYQIPANTTNPQDLWGWVRYFYNAIGFIRNGSKYESTGKKFLVITDSNPSEPYSVLNTSGNGFKKILDTAARVQDSTYDVYYPEMMGGTVDLTLTDLNEYYACILFSTKDHNTGALTPERVSQATIDNLATWRKSGNGIFVITDSASRDYTNIEDAKENNGSFAFTANRLAFNFGSYFSGVVDRSDVQYTVNQMLSWSPKAASSGLFTGMNKSIGNGQVTDFVIKGDSSESEIKLVTFPAYNKEDIPEFTFDHTGEYIYNFLCTTSENPNKPYAISFRFQVGVDDGIFVARDNGQAIDTTQILTAKRYFDLNLGYSNGTDHQDYLGDIQINGYLVGSFLFSQGITQWDLITHGSTLLIHDNDQIRINVRVPYTYTMQHQVVLSSKPASLYNEASLIGTMAWDDYKGISKAKIYEYINLSMTKYMYRVANAYKNSINIKPIVLTALRRTFLGETLNTANVYVYDNNSTWGKLSQRVQNGRHGDIVIFADTSKVVQYDELASTPGWYVMKDPGLADVTVAKLVPFFGNNRAIKNRLKTGDILDETTGQPISFHANWKIENDKLVKV
Physico‐chemical
properties
protein length:649 AA
molecular weight: 72544,34140 Da
isoelectric point:5,27497
aromaticity:0,12789
hydropathy:-0,30647

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UXD83218.1
1 649
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,6776
Central domain 73 638 567 0,6416
C-terminal 639 649 10 0,3708
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-638
C-terminal
639-649

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Koomba boorn-mokiny kep-wari Wadjak 1
[NCBI] 		2979352 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UXD83218.1 [NCBI]
Genbank nucleotide accession
OP310983 [NCBI]
CDS location
range 158546 -> 160495
strand -
CDS
ATGCCTTCTATTGTCCCGTCGCAAGTGCCGGGTCCTGTGGCACTAAACTCTAAAGTTAAATTTAACTTTAGTTCAGATATTCAGAAGGTGTATTATACAGTGAGCCCGGAGTTACCTCCGGTGCTCTCTGAATACATTGCTTATGATGGTGACCCTGCAACAGGTGGTAGTCCATTTATTGCTGTTGTGCAAGATGGCACTGGTAATGTTCTTTATGATTGTAGTTTTCCAAAATTCTATAATTTAAACTATGATACTTACCAAATTCCGGCTAATACAACAAACCCTCAAGATCTATGGGGATGGGTAAGATATTTTTATAATGCTATTGGGTTTATTAGGAATGGTAGTAAGTACGAATCAACTGGAAAGAAATTCTTAGTAATCACAGATAGTAATCCTAGTGAACCTTATTCAGTCCTCAATACGTCAGGTAATGGTTTTAAAAAGATACTAGATACGGCTGCTCGTGTACAAGATTCTACCTATGATGTTTATTACCCAGAAATGATGGGTGGCACAGTAGACCTTACTTTAACAGATCTTAATGAGTATTATGCATGTATTCTATTCTCTACTAAAGATCATAATACTGGTGCATTAACTCCTGAAAGAGTGAGTCAGGCGACTATTGATAATCTAGCTACTTGGCGTAAATCGGGTAATGGTATCTTTGTTATAACTGATTCTGCTTCAAGAGATTACACTAATATTGAAGATGCTAAAGAAAATAATGGTAGTTTTGCATTTACCGCTAATAGACTAGCCTTTAATTTTGGTTCTTATTTCTCTGGTGTTGTTGATAGGTCAGATGTTCAATATACTGTAAATCAGATGCTAAGCTGGTCACCAAAAGCTGCATCATCTGGTTTGTTTACAGGTATGAATAAATCTATTGGTAATGGTCAAGTAACTGACTTTGTTATCAAAGGTGATTCAAGTGAAAGTGAGATTAAGCTTGTTACTTTCCCAGCGTATAACAAAGAAGATATTCCTGAATTTACCTTCGATCATACTGGCGAGTACATTTACAATTTTCTTTGTACGACATCTGAAAATCCTAATAAACCGTATGCTATTTCATTTAGATTCCAAGTTGGTGTAGATGATGGTATCTTTGTTGCACGTGATAATGGCCAAGCTATTGATACTACTCAGATACTAACAGCTAAGCGTTATTTTGATCTTAATCTAGGTTACTCAAATGGTACTGACCATCAGGATTATCTAGGCGATATTCAAATAAATGGCTATTTAGTTGGATCATTCTTATTTAGTCAGGGCATTACTCAGTGGGATCTGATAACTCATGGATCAACTCTTTTAATCCATGATAATGATCAGATACGTATTAACGTACGCGTACCTTATACTTACACAATGCAGCATCAAGTGGTACTTAGTTCAAAACCTGCTTCTCTTTATAATGAAGCATCCCTTATAGGTACAATGGCATGGGATGATTATAAAGGGATAAGTAAAGCTAAAATTTATGAATATATTAATCTTAGCATGACCAAGTATATGTATCGTGTAGCGAATGCATATAAGAATAGCATTAATATAAAACCAATAGTATTGACTGCATTACGCCGTACATTCCTTGGTGAGACATTAAATACAGCTAATGTATATGTTTATGATAATAACTCCACATGGGGTAAACTATCACAACGTGTCCAGAACGGACGACATGGTGATATTGTTATCTTTGCAGATACTTCTAAAGTTGTCCAGTATGATGAACTGGCTTCAACGCCTGGCTGGTATGTAATGAAAGATCCAGGATTAGCCGATGTAACAGTAGCTAAACTAGTTCCATTCTTTGGAAATAACCGAGCTATTAAAAATAGGTTAAAGACTGGTGACATTCTTGATGAGACCACTGGTCAACCAATTTCTTTCCATGCTAATTGGAAAATAGAAAATGATAAACTTGTAAAAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
97244480a5086400aee8ad144a910a59e08b9257a9fe414ae4f910f93b2e2620
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4079
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of Four Pseudomonas aeruginosa Bacteriophages: Kara-mokiny 8, Kara-mokiny 13, Kara-mokiny 16 and Boorn-mokiny 1 Vaitekenas,A., Tai,A.S., Ramsay,J.P., Stick,S.M. and Kicic,A. — — GenBank