Protein

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Genbank accession
AYP69391.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MATLDTFSWCTQVQGGGGSLTTTNNDRSIQFGNGYMQLASSGFNTTRREYSVVYAGEDFMSVYDFCNSHRIKPFAWTPPDGKIGVWVVKPNSLGAKPVSRDVMEINVTFMEQFTSME
Physico‐chemical
properties
protein length:117 AA
molecular weight: 13041,49940 Da
isoelectric point:5,28730
aromaticity:0,12821
hydropathy:-0,30427

Domains

Domains [InterPro]
IPR010265
RBD
5–113
IPR010265
AYP69391.1
1 117
Architecture
RBD
RBD 5-113 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage phi2457T
[NCBI] 		2419683 Uroviricota > Caudoviricetes > Drexlerviridae > Tunavirus > Tunavirus Sfin1
Host Shigella flexneri 2a
[NCBI] 		42897 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Shigella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP69391.1 [NCBI]
Genbank nucleotide accession
MH917278.1 [NCBI]
CDS location
range 23551 -> 23904
strand +
CDS
ATGGCGACACTTGACACTTTCAGTTGGTGTACGCAGGTTCAAGGGGGCGGCGGCTCCCTTACCACTACCAACAATGACAGATCCATACAGTTTGGAAACGGCTACATGCAGCTTGCATCTTCTGGATTTAACACCACGCGACGCGAGTATTCAGTTGTCTATGCTGGGGAAGATTTCATGTCTGTTTACGACTTCTGCAACTCTCACCGCATAAAGCCGTTCGCATGGACTCCACCGGACGGTAAGATCGGGGTATGGGTAGTCAAGCCTAACAGCTTGGGTGCGAAGCCAGTATCACGCGACGTGATGGAGATTAACGTCACGTTTATGGAGCAGTTTACATCTATGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e83d949c2c72ec7169ab88477a32ba35e52e67bc46ba282f71e2f14548a5a3f4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7610
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage Therapy Testing against Shigella flexneri in a Novel Human Intestinal Organoid-Derived Infection Model Llanos-Chea,A., Citorik,R.J., Nickerson,K.P., Ingano,L., Serena,G., Senger,S., Lu,T.K., Fasano,A. and Faherty,C.S. — — GenBank