Protein

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Genbank accession
APU92807.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANCNDYISADDLKTGKQAILHIEHVAKSRDAAGNPALEVTDTIRGESVTNKTLDGLKNLYNQAISQVGYITLKSFQTGAPLPGNQLTLPNQVLQDETNGEYYRWDGDFPKTVAAGSTPATTGGVGSGAWLSVGDATLRDELNNEGVINFSHTDTYGNDSVGAHLQNVVYPTDAPFNAATDGVTDATVAIKSAIAHCISKGKKLVLNHLFMITDTLVISDGLHVKCLTGDSGVKSDVPAGKYAVKITGANSGWFGGKILGKNLPDSTTVRQDGVLFDENAAYCFITGTEVTGFFAKGLHTSDADGVGYGIYDKGHGTVIAKCYANSKFCVALGGTEGRVIKNHITNNYLTSGEARPWSLASNYWDGIVSENAHRYVIAFNEVSACGQSGIYFGGNGGYSTDNIIVNNTVYNCWNRGIDMGLFSEKSATNDVLRNIVKGNNTYNNRENNIWLAGVSNCSVVGNTSWFDANYDVIFAGYPGGHICISLASGANGEACVGNTIDSNTCIDPRGNAGITVPTGATGNVFGSGNNLSQAGDIYIASPDLITSNRFELSVTGSFTPVLLPASGSISLSSSSTGVFRATGKRIDFSITVNVSSISSPSGMLNIAYLPGMSGKTSSISMFIVDYWNNIILSNGVIPLASLNLSNQDQIAIYRTDGGRVLYDFSSLLTSTSSFVIKGFVDFN
Physico‐chemical
properties
protein length:683 AA
molecular weight: 72173,51940 Da
isoelectric point:5,24518
aromaticity:0,08931
hydropathy:-0,07423

Domains

Domains [InterPro]
DC_0018
ATT
1–260
DC_0018 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 DC_1378
G3DSA:2.10.10.80
ATT
69–144
G3DSA:2.10.10.80 IPR012334 IPR006626
IPR040775
RBD
87–135
IPR040775 IPR011050
IPR039448
ENZ
293–463
IPR039448
APU92807.1
1 683
Architecture
ATT
STR
RBD
ATT 1-260 | STR 261-536 | RBD 537-683
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APU92807.1
1 683
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,9899
Central domain 187 544 359 0,9921
C-terminal 545 683 138 0,9901
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-544
C-terminal
545-683

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_Sasha
[NCBI] 		1913114 Uroviricota > Caudoviricetes > Sashavirus >
Host Salmonella enterica subsp. enterica serovar Kentucky
[NCBI] 		192955 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APU92807.1 [NCBI]
Genbank nucleotide accession
KX987158.1 [NCBI]
CDS location
range 31707 -> 33758
strand -
CDS
ATGGCTAATTGCAATGATTATATCAGCGCAGATGATTTGAAAACAGGTAAACAAGCGATTTTACACATTGAGCATGTGGCGAAAAGTCGTGATGCTGCTGGTAACCCCGCACTGGAAGTAACAGATACTATCCGTGGTGAATCTGTTACTAACAAAACATTAGATGGACTTAAAAACTTATATAATCAAGCAATATCACAGGTAGGTTATATAACACTAAAAAGTTTTCAGACAGGTGCACCACTACCCGGTAACCAATTAACGTTACCAAATCAAGTACTACAAGATGAAACAAACGGTGAATACTATCGCTGGGATGGTGATTTCCCTAAAACTGTAGCTGCTGGTTCAACTCCGGCGACAACTGGTGGTGTAGGCTCAGGTGCATGGTTGAGTGTTGGTGATGCGACATTAAGAGATGAGTTAAATAATGAAGGGGTAATCAATTTCTCACATACTGATACATATGGTAATGACAGTGTAGGAGCGCATCTTCAAAATGTCGTATACCCAACAGACGCCCCTTTCAATGCCGCTACAGATGGTGTTACAGACGCAACAGTAGCTATTAAAAGTGCAATAGCGCACTGTATATCAAAGGGTAAAAAATTAGTATTAAACCATTTGTTCATGATCACAGATACACTGGTAATCAGTGATGGGTTGCATGTTAAGTGTCTTACTGGTGACTCAGGTGTTAAGTCTGATGTACCAGCAGGTAAATATGCAGTAAAAATAACGGGGGCCAATTCTGGTTGGTTTGGGGGTAAAATCCTGGGTAAAAACTTACCAGACTCTACAACAGTAAGACAGGATGGCGTACTCTTTGATGAGAATGCTGCATACTGCTTTATTACTGGTACAGAGGTTACCGGCTTCTTTGCAAAAGGTTTGCATACCTCAGATGCTGATGGTGTAGGCTATGGTATTTATGATAAAGGGCATGGCACTGTCATCGCTAAATGCTATGCAAACTCAAAGTTCTGTGTAGCTCTGGGTGGTACTGAAGGTCGCGTAATTAAGAACCATATAACCAATAATTACCTTACATCCGGGGAGGCTAGACCCTGGAGTTTGGCTAGTAACTATTGGGATGGGATAGTATCCGAGAATGCTCACAGATATGTCATCGCTTTTAATGAGGTATCAGCCTGTGGACAGAGTGGAATTTACTTTGGTGGGAATGGTGGTTATTCAACAGATAACATCATCGTAAATAACACAGTTTACAACTGCTGGAACCGTGGTATTGATATGGGTTTGTTTTCTGAAAAATCGGCAACAAATGATGTACTCAGAAACATTGTCAAGGGTAACAATACCTATAACAACCGAGAAAATAATATCTGGCTTGCAGGTGTTAGTAACTGCTCAGTAGTTGGTAATACATCGTGGTTTGATGCCAACTATGATGTAATTTTTGCAGGCTACCCAGGCGGTCATATTTGTATTAGTCTGGCTTCTGGTGCAAATGGCGAGGCTTGTGTAGGGAACACAATCGACTCTAATACTTGTATTGACCCTAGAGGTAATGCAGGTATAACAGTACCTACTGGGGCAACTGGTAATGTTTTTGGGTCAGGTAATAATCTATCTCAAGCTGGTGATATTTATATAGCTTCCCCTGACTTGATTACGTCTAACAGATTTGAGCTGTCAGTCACTGGTTCGTTCACACCAGTCCTACTTCCTGCAAGTGGAAGTATAAGCCTATCGTCATCAAGTACAGGAGTCTTTAGGGCAACTGGTAAGAGAATAGATTTTTCTATAACAGTAAATGTATCTTCAATATCATCGCCAAGTGGGATGTTAAATATCGCCTATCTTCCAGGAATGAGTGGGAAAACAAGCTCAATATCAATGTTTATTGTTGACTATTGGAATAATATAATATTATCAAATGGCGTAATTCCATTGGCTTCATTAAATTTATCAAATCAGGATCAAATAGCAATTTACCGAACTGACGGAGGGAGGGTTCTTTATGACTTCTCTTCACTTCTAACTTCAACATCATCGTTTGTAATAAAAGGTTTTGTTGATTTTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7266f5b7d6afc2040a0c91e57a23f0d6f5ce16795505a7cbddde53744f7e4a60
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8243
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
DNA Packaging and Genomics of the Salmonella 9NA-Like Phages Zeng,C., Gilcrease,E.B., Hendrix,R.W., Xie,Y., Jalfon,M.J., Gill,J.J. and Casjens,S.R. 2019 31462565 GenBank