Protein

View in Explore
Genbank accession
YP_009612733.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAEYKLSELNSIDTVRSEDLLHLRIIKRSDMLGDEDRKMTYANFLASFKLERFLQLTGGDMTGNLGIVKLRYGGKDLLDPTGSSEVILGDTAKTFRINASALRLTVNDATRSATVYHTLNKPSPNELGMRTNTENDARYAMKETENTFLARQIININGVGLTLKSILPDGGAYIEARDSNNALRFTVGNLTSGTDVTLVNSKGATLTLGTNSVSVDKNFEINGQVQPNNWNNLDARFFTQTAADQRFARLNASNNFVGVNNFNGKTYVIADSNALNLRAATENAALFMRGYNSAGTGAWYVGQPDGTQSEIVLANQMTNVNLKIATEFSFNKAINVTGQVKPSDFANFDTRYVPSSLTNVLARTNAANVFTNPQTIVTTDAAFTLQSGTANSPLYIVGANADGNRRWYVGNGEGSRPNSLFLYNYSSGGVQLEIADTFMFNRSVSVTGQVQPTDWSNFDSRFYTQSAANSRYMLSGVSGTGTEVGDETGVAWNAKTGLYNVTSSSGGSTHLVYQMYLGIGASTPSAQLRFEYKNGGIYYRTARDSFGFEEFWSKIYTDKAKPTPSELGAYTKAEVDQRIASAVTDSTDLKKVYPVGIVTFFASNVNPNTAFPGTTWTYLTEGANRTIRIGSANGSDVKGLGGADTVALSVGHIPAHTHSFSGTTTTFDYGTKYTDAQGAHDHDRGNMEISGDFGFFRSDANSFYTASGAFAISGSQASRGYTGSQFTYGTPVNFYASRTWTGRTSWVGAHGHGVGIGAHNHTFSGNTGATGSGAAFSVLNTYIKLMAWVRTA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 85487,47090 Da
isoelectric point:7,22011
aromaticity:0,10732
hydropathy:-0,32854

Domains

Domains [InterPro]
DC_1993
STR
115–359
DC_1993 G3DSA:6.20.80.10 IPR022246
G3DSA:6.20.80.10
STR
158–217
G3DSA:6.20.80.10 G3DSA:6.20.80.10 DC_1993
IPR048388
ATT
170–246
IPR048388 IPR048388 IPR048388
YP_009612733.1
1 792
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
STR 115-169 | ATT 170-246 | STR 247-271 | ATT 272-357 | STR 358-382 | ATT 383-474 | STR 475-788 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf13
[NCBI] 		2024316 Uroviricota > Caudoviricetes > Andersonviridae > Mooglevirus > Mooglevirus Sf13
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009612733.1 [NCBI]
Genbank nucleotide accession
NC_042017.1 [NCBI]
CDS location
range 75636 -> 78014
strand -
CDS
ATGGCTGAATATAAGCTAAGTGAGCTAAACAGTATTGATACAGTTCGCTCAGAAGATTTACTTCACCTAAGAATTATCAAAAGGTCTGATATGCTAGGTGATGAAGACCGTAAAATGACCTATGCAAATTTCCTTGCCTCTTTCAAACTAGAAAGATTCTTACAACTAACTGGTGGGGATATGACAGGGAATCTTGGCATCGTCAAATTAAGATACGGTGGAAAAGACTTATTAGACCCAACAGGTTCTTCTGAAGTTATTCTCGGTGACACTGCCAAGACCTTTAGAATTAATGCAAGTGCTTTAAGACTAACTGTAAATGATGCCACAAGGTCTGCAACAGTTTACCACACACTTAATAAACCATCTCCTAATGAATTAGGTATGAGAACTAACACTGAAAATGATGCAAGATATGCTATGAAGGAAACTGAAAATACTTTCTTGGCAAGACAAATCATTAATATCAACGGTGTTGGTTTAACACTTAAAAGCATCTTACCAGATGGTGGAGCATATATTGAAGCAAGAGATTCAAATAATGCTTTGAGATTCACAGTTGGTAATTTGACTTCTGGTACTGATGTTACATTAGTTAACAGCAAAGGTGCTACGTTGACTCTTGGTACAAACTCTGTTAGTGTTGACAAGAACTTTGAAATCAATGGACAGGTTCAGCCTAATAACTGGAACAACCTTGATGCAAGATTCTTTACACAGACTGCTGCTGACCAGAGATTTGCACGACTTAATGCAAGTAATAACTTTGTTGGGGTTAACAACTTCAACGGGAAGACTTACGTTATTGCAGATAGTAATGCACTCAACTTAAGAGCGGCTACAGAGAATGCTGCATTATTTATGCGTGGTTACAACAGTGCTGGGACAGGTGCTTGGTATGTGGGTCAACCAGATGGTACGCAGTCTGAGATTGTTTTAGCAAACCAGATGACAAATGTTAACTTGAAAATTGCTACAGAGTTTTCATTTAATAAAGCTATCAATGTAACTGGTCAGGTAAAACCAAGTGACTTTGCAAACTTTGATACAAGATATGTTCCAAGCTCTTTAACGAACGTTCTTGCAAGAACTAATGCTGCAAACGTTTTTACTAACCCACAGACTATTGTTACTACAGACGCGGCTTTCACATTGCAAAGCGGGACAGCTAACTCGCCATTGTATATTGTTGGTGCTAATGCAGACGGCAACAGACGTTGGTATGTTGGTAACGGTGAAGGTAGTAGACCAAACTCTCTGTTCCTGTACAACTACTCAAGTGGTGGTGTTCAGTTAGAAATTGCTGATACTTTCATGTTCAACAGAAGCGTATCAGTAACTGGTCAGGTTCAGCCTACAGATTGGTCAAACTTTGACTCAAGATTCTACACACAATCTGCTGCAAACTCAAGATATATGTTGTCTGGTGTCTCTGGAACTGGAACCGAAGTCGGTGATGAAACAGGTGTTGCTTGGAATGCAAAAACAGGTTTGTACAATGTTACAAGTTCAAGTGGTGGTTCAACTCACTTAGTTTACCAAATGTACCTTGGAATTGGCGCATCCACACCTTCTGCACAGCTTAGGTTCGAATACAAAAATGGTGGAATCTACTATAGAACGGCAAGGGACAGTTTTGGTTTTGAAGAGTTTTGGTCTAAAATCTATACAGATAAGGCTAAACCTACACCTTCTGAACTTGGTGCTTACACCAAGGCTGAAGTAGACCAACGTATTGCCTCTGCGGTAACTGATTCTACAGACCTTAAGAAAGTGTATCCAGTTGGTATTGTGACGTTCTTTGCTTCTAATGTCAACCCAAATACAGCTTTCCCAGGCACTACTTGGACTTACTTGACAGAGGGTGCAAACAGAACTATTAGAATCGGTTCTGCAAATGGTTCCGATGTGAAAGGGCTTGGTGGTGCTGATACAGTTGCATTAAGTGTTGGTCATATCCCTGCGCACACTCACAGCTTCTCTGGAACAACCACTACCTTTGATTATGGTACTAAGTACACAGACGCTCAAGGTGCTCACGACCATGACAGAGGTAACATGGAAATCTCTGGTGACTTTGGTTTCTTCAGAAGTGATGCAAACAGCTTCTATACAGCAAGTGGGGCATTCGCTATCTCAGGTTCACAAGCCTCTAGGGGTTATACTGGTTCACAATTCACTTATGGTACACCTGTCAACTTCTACGCATCAAGAACTTGGACAGGGAGAACAAGTTGGGTAGGTGCTCACGGTCACGGTGTAGGTATTGGTGCTCACAACCACACATTCAGTGGTAACACTGGTGCAACTGGTTCTGGTGCAGCATTCAGTGTTCTTAACACTTACATTAAATTAATGGCTTGGGTAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8413be530f0a536d69939c2a0a5a32da3ab26e2e9dcbdbd2a1c50b72d1fe2d09
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6723
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank