Protein

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Genbank accession
AYP28298.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRRVEDIFGSFQIAPRQTPWVFISQGGETKVTVPFAFQSCVLTIDGAVQIPTSVDAVNGSYTVSGQDILFSDDTVQKHLKPEQQLYFLFDTAWGDIGSGGGGSGGNNGVMVERKFTTTGGETILDPKITFSSVLLFVDGVAKYPGEYFTVSGNKLVYTNPMPAGEEVYALFGIPSSSMSLYATQEDLTGVQANIDGLKTQLGTPWNGLVSDVYTYIDAVTSITSRAVPANINIVYTKKYSAASLSRSDIQLVRDPAEDNVLLATKTWVQNGAVNGKLLAFDNAGKAFRLNPINGQYSIESLGGGDGGDDTVLIELAQQLSVKPVQLVENKVYNYTRAVKHTGGRGWIGKNTTFRCTNATASVPFVTSLKTAQGADNDLVNGTSGVANAIWSGILIDTNYSDTTGVVGFQFAENTLDNWVKCRFVDVVFKNSKFDNLAMQNGCIELRFENCRFENAGEDSVTIRKTCERVVFENCTVDKTALVAHVSSGNAKFGDGIVVKAKFVTINNCTFKDVGNNIKGAGIANNAEDNDNVDQASYNKYTNNTFINCYGGMGIGTVNAGFIAAGQLIGDLIITGNEFINTQANAIGIRYVKNVQIRDCIINKQNLQGYHAVELINVVNVDAAATVVNASGGACTVTNCNGKVDIHANDVSKANALNSLVIGNCDGLKFTADLYLSGRTAMTVDSFSNGKIDVRLRGVTKAGLVGNIVSRSEINVAATSCGNNGVTMTALNNSVLRAEVYDAGTEADVTYVSARLVSGSRNRVFVTSTSGQTNRPSYDILVEAGVSNGALYSDCSAGKTGKVNILTGATITQFENL
Physico‐chemical
properties
protein length:816 AA
molecular weight: 86945,53240 Da
isoelectric point:5,24308
aromaticity:0,08211
hydropathy:-0,05392

Domains

Domains [InterPro]
DC_0116
ATT
3–97
DC_0116 IPR012334 DC_1084
IPR011050
STR
438–604
IPR011050
IPR006626
Unmapped
442–464
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AYP28298.1
1 816
Architecture
ATT
STR
RBD
ATT 3-97 | STR 324-631 | RBD 635-816
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYP28298.1
1 816
Domain Start End Length (AA) Confidence
N-terminal 1 310 310 0,9937
Central domain 311 791 482 0,9874
C-terminal 792 816 24 0,3856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-310
Central
311-791
C-terminal
792-816

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaA_3M
[NCBI] 		2419930 Uroviricota > Caudoviricetes > Pantevenvirales > Miltonvirus > Miltonvirus 3M
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Tertiary structure

PDB ID
9f4e461bcfad89e6d28769de9b3944eb4922a25ad62094073c5c1908723a77fa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7340
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50