Protein

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Genbank accession
WPJ68138.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MPLITQSIKNLKGGISQQPDILRFSDQGEAQVNCWSSESDGLQKRPPTVFKRRLNIDVGSNPKFHLINRDEHEQYYIVFNGSNIQVVDLSGNQYSVSGEVDYVKSSNPRDDISVVTVADYTFVVNRKVVVKGGSEKSHSGYNRKARALINLRGGQYGRTLKVGINGGVKVSHKLPAGNDAENDPPKVDAQAIGAALRDLLVAAYPNFTFDLGSGFLLITAPEGTDINSVETEDGYANQLISPVLDTVQTISKLPLAAPNGYIIKIQGETNSSSDEYYVMYDSNTKTWKETVAPGVVTGFDVTTMPHALVRQPDGSFEFKTLDWSKRGAGNDDTNPMPSFVDAAINDVFFYRNRLGFLSGENVIMSRSASYFSFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFSEQLLLWSDEVQFVMTSSGVLTSKSIQLDVGSEFALGDNARPFAVGRSVFFSAPRGSFTSIKRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGTGTENYICVNSTGAYNRIYIYKFLFKDGVQLQASWSHWEFPKDDKILASASIGSTMFIVRQHQGGVDIEHLKFIKEATDFPSEPYRLHIDSKVSMVIPIGSYNADTYKTTVDIGSAYGGNAPSPGRYYLIDSKGAYVELGDLTGISTVVTLNGDWSGRTVFIGRSYLMSYKFSRFLIKIEDDSGTQSEDTGRLQLRRAWVNYKDSGALRLIVRNGEREFVNTFNGCTLGQQTIGTTNIGDGQYRFAMNGNALTTSLTLESDYPTPVSIVGCGWEASYAKKARSV
Physico‐chemical
properties
protein length:785 AA
molecular weight: 86248,58520 Da
isoelectric point:5,62117
aromaticity:0,10573
hydropathy:-0,26446

Domains

Domains [InterPro]
IPR058003
TTP
1–784
IPR058003
WPJ68138.1
1 785
Architecture
TTP
TTP 1-784 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ68138.1
1 785
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9807
Central domain 138 342 206 0,0972
C-terminal 343 785 442 0,1741
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-342
C-terminal
343-785

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PRF-SP6
[NCBI] 		3079528 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Paratyphi B
[NCBI] 		57045 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ68138.1 [NCBI]
Genbank nucleotide accession
OR290783 [NCBI]
CDS location
range 13627 -> 15984
strand -
CDS
ATGCCGCTTATCACACAAAGCATAAAAAATCTTAAAGGGGGCATTAGCCAGCAGCCTGATATACTGAGGTTCTCAGACCAAGGCGAGGCACAGGTTAACTGCTGGTCATCCGAGAGTGATGGCCTCCAGAAGCGCCCACCTACAGTCTTCAAGCGCAGACTTAACATCGACGTGGGGAGCAACCCTAAGTTCCACCTGATTAACCGTGACGAGCATGAGCAGTATTACATCGTGTTCAATGGGTCCAACATTCAGGTAGTTGACTTGAGTGGCAATCAATACTCAGTGTCAGGTGAGGTAGACTACGTTAAGTCCTCCAACCCACGAGATGACATCAGTGTCGTTACCGTTGCAGACTATACGTTCGTAGTTAACCGTAAGGTTGTCGTCAAAGGTGGAAGCGAGAAGTCACACTCTGGCTATAACCGCAAAGCTCGTGCTTTGATTAACCTGCGTGGTGGACAGTATGGTCGCACCCTTAAGGTGGGAATCAACGGTGGCGTTAAGGTCTCACATAAGCTACCAGCAGGTAATGATGCCGAGAATGACCCACCTAAGGTGGATGCTCAGGCAATCGGCGCCGCTCTGAGAGACCTTCTTGTTGCTGCCTATCCTAACTTCACGTTCGACCTTGGGTCTGGATTCCTGTTAATCACTGCCCCTGAAGGGACCGACATTAACTCAGTGGAGACGGAGGATGGCTACGCTAACCAGCTAATAAGCCCAGTCCTAGACACTGTGCAGACAATCTCTAAACTACCTCTTGCCGCTCCTAATGGGTATATCATTAAGATTCAAGGTGAGACAAACAGTAGCTCCGATGAATACTACGTGATGTATGACTCCAACACTAAGACGTGGAAGGAGACAGTGGCGCCGGGAGTTGTCACTGGTTTTGATGTCACCACAATGCCACATGCTCTGGTCAGACAGCCTGATGGCTCCTTTGAGTTTAAGACTCTTGATTGGTCCAAGCGTGGTGCTGGTAACGATGACACAAACCCTATGCCTAGCTTCGTGGATGCTGCGATTAACGATGTGTTCTTCTACAGGAACAGACTTGGGTTCTTGTCTGGTGAGAACGTAATAATGAGCCGTTCAGCCAGCTACTTTTCGTTCTTCCCTAAGAGTGTGGCGACACTGAGTGATGATGACCCTATTGATGTAGCTGTAAGTCACCCTCGAATCTCAATCCTTAAGTATGCAGTTCCGTTTAGCGAGCAGCTACTACTTTGGTCGGATGAGGTTCAGTTCGTGATGACAAGCTCTGGGGTCCTTACCTCGAAGTCTATCCAGCTTGATGTAGGCTCAGAGTTTGCCTTAGGTGACAATGCCAGACCGTTCGCTGTAGGACGCTCAGTCTTCTTCTCAGCGCCTCGTGGGTCATTCACCAGCATTAAGCGATACTTTGCTGTAGCTGATGTGTCTGATGTGAAGGATGCCGATGATACAACTGGTCACGTACTGTCCTACATCCCTAACGGGGTGTTTGATATTCAAGGTACAGGTACTGAGAACTACATCTGCGTCAACTCTACAGGTGCATACAACAGAATCTACATCTACAAGTTCTTGTTTAAGGACGGCGTACAACTTCAAGCCTCTTGGTCACACTGGGAGTTCCCTAAAGATGATAAGATTCTGGCGTCTGCCTCTATTGGCTCTACCATGTTCATCGTTCGTCAGCATCAAGGAGGGGTAGACATTGAGCACCTTAAGTTCATAAAGGAGGCAACTGACTTCCCGTCAGAGCCATATAGACTACACATTGACTCAAAGGTGTCTATGGTAATTCCAATTGGCTCATATAATGCTGACACCTACAAGACTACGGTTGACATTGGTTCTGCTTATGGTGGAAACGCTCCGTCTCCCGGTCGGTACTATCTGATTGACAGTAAGGGTGCTTATGTGGAACTTGGGGACTTGACCGGTATCTCTACTGTGGTTACCCTCAACGGCGATTGGTCAGGACGTACAGTGTTCATCGGACGGTCCTATCTGATGTCCTACAAGTTCTCACGGTTCCTGATTAAGATTGAAGATGATAGTGGCACTCAGTCTGAAGACACTGGTCGTCTACAGCTTCGTCGCGCTTGGGTCAACTACAAAGACTCTGGCGCTCTGAGACTCATTGTCAGAAATGGTGAGCGGGAGTTCGTAAATACCTTCAACGGGTGCACACTTGGTCAGCAAACCATCGGGACTACAAACATTGGCGACGGGCAGTATCGCTTCGCTATGAATGGTAACGCATTGACCACGAGTCTAACCTTAGAGTCCGACTATCCTACCCCAGTGTCAATCGTTGGTTGTGGCTGGGAGGCGTCATACGCTAAGAAAGCTCGTTCCGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5000bc4985f8442a7200f5ac0e72538123838b6ad1a761d90c5b00df6395a0dd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3269
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50