Protein

View in Explore
Genbank accession
UPW39107.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNNNSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIVNIKSNDPGRVILTAIEINGTHRAFLNGTQSKVGQTIVATQADPFRSFASVSQTSGFAFGNSLASGTYNYNPSIGHEESISRSGTGGTTLHSTYHGIVRPGAGAPVGVTVAEAFAQLGFPTNSSTVPVDGNNQYYWDPGWMSPLGAAHRGHDWFYVCNSNIRGYGGVRQGLPGSVNTMYHDGGNRFVCRGSTTNLANQSGDSTILQDWYNITPTKVIWYVLNLRYSNGGMSISGNPFTGSDILISPSNFIIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGVFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYKFGAGKQWYVNSNNNTIGNEHGVVWGPSAVPLRLFSGNVGSSYMGDDITPHYPGTGDRYVGLSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNNGVFQVQGRKAHSYSNGDAIFHQILTLPVGYLVPFHTTSAFRYTPNNALSRNSFIYTVKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62431,72540 Da
isoelectric point:8,14708
aromaticity:0,11111
hydropathy:-0,17880

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
UPW39107.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW39107.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0262
Central domain 11 209 200 0,4244
C-terminal 210 585 375 0,8293
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_ESCO40
[NCBI] 		2918880 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus ESCO40
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW39107.1 [NCBI]
Genbank nucleotide accession
OM386660 [NCBI]
CDS location
range 95762 -> 97519
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAACAATAATAGTATTTTTCATAGTGATATGCCATTTGTTCTAGTTGATGGTACTTATGAGGCAGGATTAGGCAATGCCGGGAATGGGTTTTTTGTATGTCAAATGCCTTCTGATATAGTAAATATTAAATCTAACGATCCTGGTAGAGTTATACTAACTGCTATTGAAATTAATGGTACTCACAGAGCTTTTCTTAATGGTACTCAGAGTAAAGTTGGTCAAACTATAGTTGCCACCCAGGCAGATCCCTTTAGATCTTTTGCTAGTGTTTCTCAAACCAGTGGATTTGCCTTCGGTAATAGTCTAGCATCTGGAACTTATAATTATAATCCCTCGATAGGGCACGAAGAATCTATCTCTAGGAGTGGCACAGGGGGTACTACGTTACATAGTACATACCATGGTATAGTTAGGCCCGGTGCGGGAGCTCCTGTAGGTGTTACTGTTGCAGAAGCCTTTGCACAATTAGGTTTTCCTACTAATAGTAGCACAGTACCTGTAGATGGGAATAACCAGTACTATTGGGATCCTGGATGGATGTCACCCCTAGGGGCAGCGCATAGAGGGCATGATTGGTTTTATGTTTGTAATTCTAATATACGTGGGTATGGTGGGGTTAGGCAAGGGCTCCCAGGTAGTGTAAATACTATGTACCACGACGGCGGGAACAGATTTGTTTGTAGGGGATCTACTACTAATCTGGCCAACCAGTCGGGTGACTCTACAATACTACAGGACTGGTATAATATAACTCCTACTAAGGTTATTTGGTATGTTCTTAATTTAAGGTACTCTAATGGTGGAATGAGTATTTCCGGCAATCCCTTTACTGGTTCTGATATTCTTATATCTCCTTCTAATTTCATAATTAAAGGGGTAAGTCTCCCTAATACCGGATATAAATTTATAAATCAGAATGCCTTTGGTAACCTAGGTTATCGTCCTGATATGGAGTATATAGGGAATAACGCAGCGTATACTGGGGTTTTTGGGGACACCACTGCAAGGTGTGAACTTGTAGGATCTAGTAACGGAGGGTTGTGGTCTCCTGTAGATTATGGGGGAGCTAAATCACAGATTAGCATTTATAAATTTGGGGCCGGTAAACAATGGTACGTAAACTCAAATAATAATACTATTGGTAATGAACATGGGGTTGTTTGGGGACCATCAGCAGTTCCACTTCGACTTTTTAGTGGAAATGTAGGTAGTTCTTATATGGGAGATGATATTACACCCCACTATCCAGGAACTGGGGACAGATACGTTGGTTTATCAACTATTGGGCTAGGTATACCAGGCGGAAATGCTACAGTAATTCTTACTACTGAAGTTATATCAGGTAATCTTAATTGTGCGGGTGTTCCAGCTAATACATGGAATAATGGTGTGTTTCAAGTACAAGGAAGAAAAGCGCATAGTTATAGTAATGGAGATGCAATATTCCACCAGATTTTAACGCTACCTGTGGGTTATCTAGTACCTTTTCATACTACATCTGCTTTTAGATATACACCTAACAATGCTCTAAGTAGGAACAGTTTTATATACACTGTTAAAAATTTAGGAAATGGAAATGTAGAGTTAGGAGTAGTTATGCACGTGAGTTTGGGTAGCGCAGTTTTCCTACCTAGATTAAGAGTAACAGTTCAGCGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
112bd3ebd83e00d7c5b1f985b83334efa587f2dcc56e704cc413a2d2b0e139d3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2478
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Avian Pathogenic Escherichia coli bacteriophages Nicolas,M., Trotereau,A. and Schouler,C. 2015-06 — GenBank