Protein

View in Explore
Genbank accession
YP_010662710.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MARKTIDDLPVATPEAVATGSLLIADENGLEYRATTAIIGGVHLYFTAEDDQSPWIFGRLTSPGRTVENVTVTFVAIPRGGGTTLTKTAITDALGNFTYNFTTLVRGVTYDITASVAPYLAEVTVKYVAPLSAPIDTPVATSTGKVGDTITVSAPNFDGSPTAFHYRYLRGPNYIIPGATSSVYTLVADDDADVITAQVQAVNAGGESIWYSANPIGPVSNKTSVAISDPVIEGDDTLGGRLVLVSPGVASENAVVKSDEWQLDGVKIPSTKAPVKRYLSGAATSTVPTAYPDGNNHHGISFTGAAYSGSNTYSYSIAASATENDYIINATGSAGGNEGPQVYDLYMRHLNTNSAIRIKMYASKYRAGVLQGSEVQMAKVGATAGQEYAALSITTNTTHHWTVTNDFGEWLAGDYLVFRQQATNISSSGSNNYQWDARAGASYAMLPIGSVQDIQKTLKSFTSKADMANKAARLKQTLSNGFNEIVLYSNEIVYEDAVTQTAAPTNITLPAIVAPSTRANTTWQADLGAWSNQPNSYTVQWTDNGADIVGATLMNYKPTTAQEGHDISFYVLPDNGIGSPVSSAAIPVTVQAAATYYNIATGNDANDGSTELLAKQSLTGSDFIASGSTAILAGDFGTRLKLGSSRNYEGLGTGLTSIGSLTTQYAIDHYTDDGSLGRSSVKISKMSISSADRAIMARQGANWVLEDIDITSAGFGAGVIAENASGIMFYKNNGITMRRVRLLNIKSDGLYSDSNDKVLVEDCLFLPVNTAEGDTIQTRADRTSSSGAPGPHQKGFVMRGTYLDMHSKKTSSGKGCLVTNMADYVYTHDSQLDGNNFVHGTDEGDCQVYCRNTNRYARMNSYSFGYGIGGYDNQPASYNHQLYDNYWYDINRALSFTGISVTGYSGTKSGRVDIVAHDETIVKCASGLRIDRPTSGLFRGFVFHNVTRPIDRITTTLPAGGEIQAYISDSHYTYNGTVLVPPSVTTHAVITGDRTVGSELTGPNSVFDTSTVLTAFPGAVITRSYQWRRHKPQVQWAGWSEHLGWKCEWIDGATSASYTITDADQGCLISRVDRVHLTFTEASVEKMVTALSYDASYATSTPIPRSGDLAVPLPVLPSTGTVSLAALEGAVALALPDLITGETRTFLNPARAHEVYTGNLLTIDSNGDILKGAGTFTNGQVFGMKVRQKRGIDTIDYVINFTVVA
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128619,56010 Da
isoelectric point:5,32800
aromaticity:0,08880
hydropathy:-0,17112

Domains

Domains [InterPro]
DC_1007
ATT
111–247
DC_1007 DC_1007 DC_0572
G3DSA:2.60.40.2700
RBD
132–218
G3DSA:2.60.40.2700 G3DSA:2.60.40.2700 DC_2223 G3DSA:2.60.40.2700
IPR011050
STR
585–949
IPR011050
YP_010662710.1
1 1205
Architecture
ATT
ATT
STR
RBD
ATT 111-247 | ATT 486-614 | STR 615-949 | RBD 950-1205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010662710.1
1 1205
Domain Start End Length (AA) Confidence
N-terminal 1 258 258 0,8756
Central domain 259 519 262 0,3988
C-terminal 520 1205 685 0,1610
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-258
Central
259-519
C-terminal
520-1205

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL2RES
[NCBI] 		103371 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus RL2RES >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010662710.1 [NCBI]
Genbank nucleotide accession
NC_070889 [NCBI]
CDS location
range 24471 -> 28088
strand -
CDS
ATGGCACGCAAAACAATCGATGATCTTCCAGTTGCGACTCCTGAAGCCGTAGCTACTGGGAGCTTGCTCATCGCTGATGAGAACGGCTTGGAGTATCGAGCAACGACTGCCATTATCGGCGGCGTTCATCTGTACTTCACTGCTGAAGACGATCAATCTCCGTGGATCTTTGGACGTCTCACGAGTCCCGGTCGCACTGTCGAAAACGTCACAGTAACTTTCGTCGCTATTCCACGCGGAGGCGGCACGACACTCACGAAGACTGCAATCACCGACGCACTCGGCAACTTCACCTACAACTTCACGACTCTCGTCCGTGGCGTCACTTATGACATCACTGCAAGTGTCGCACCATATCTTGCCGAAGTGACTGTCAAGTATGTCGCACCTCTGTCTGCTCCTATCGACACTCCTGTGGCGACTTCGACTGGCAAGGTCGGCGACACGATCACAGTCTCAGCTCCAAACTTCGACGGCAGCCCGACAGCATTCCACTATCGGTACCTTCGCGGTCCAAACTACATCATTCCTGGAGCAACCAGTTCAGTCTACACCCTCGTGGCTGACGACGACGCTGACGTCATCACGGCTCAGGTCCAGGCAGTCAATGCAGGAGGCGAGAGCATCTGGTACAGCGCAAATCCGATCGGACCGGTTTCGAACAAGACGTCCGTAGCAATCTCCGATCCGGTTATCGAAGGTGACGACACACTCGGCGGTCGTCTGGTCCTCGTATCTCCTGGAGTTGCATCCGAAAACGCTGTCGTCAAGTCTGACGAATGGCAACTCGATGGTGTGAAGATTCCGTCGACAAAAGCGCCTGTCAAGCGTTATCTCAGTGGTGCTGCAACTAGCACTGTTCCGACTGCATATCCTGATGGCAACAACCATCACGGTATCAGTTTCACAGGCGCTGCTTATAGCGGTTCGAACACCTACAGCTATTCGATTGCTGCAAGCGCGACTGAAAACGACTACATCATAAACGCAACTGGCTCTGCTGGTGGTAACGAAGGCCCTCAGGTCTACGATCTGTACATGAGACACTTGAACACGAACTCAGCCATTCGTATCAAGATGTATGCCTCGAAGTACCGTGCTGGTGTCCTTCAGGGTTCTGAAGTTCAGATGGCAAAGGTCGGTGCTACTGCTGGTCAAGAATATGCCGCGCTCAGCATCACTACTAACACCACTCATCATTGGACTGTGACGAACGACTTCGGCGAATGGCTTGCCGGTGACTATCTCGTCTTCCGTCAGCAAGCTACGAACATCTCGAGTTCTGGTTCGAACAACTATCAGTGGGACGCACGAGCCGGCGCCAGCTATGCAATGCTTCCGATCGGTTCTGTCCAGGACATCCAGAAGACTCTCAAGTCCTTCACCAGCAAAGCTGATATGGCGAACAAGGCTGCCAGACTCAAGCAGACTCTGTCGAACGGTTTCAACGAGATCGTACTGTACTCGAACGAGATCGTTTATGAAGATGCTGTGACTCAGACCGCCGCACCTACGAACATCACTCTCCCTGCTATCGTCGCTCCTTCGACTCGAGCGAACACCACCTGGCAGGCAGATCTAGGTGCATGGAGCAACCAGCCGAACTCGTATACCGTTCAGTGGACTGACAACGGTGCAGACATCGTCGGTGCAACTCTGATGAACTACAAGCCGACGACTGCTCAAGAAGGTCATGACATCAGCTTCTACGTCCTTCCTGACAACGGCATCGGTTCTCCGGTATCGTCCGCTGCAATTCCTGTCACTGTTCAAGCGGCAGCCACGTACTACAACATCGCGACTGGTAACGATGCAAACGACGGTTCAACTGAGTTGCTTGCAAAGCAGTCTCTGACTGGATCCGATTTTATCGCTTCTGGTTCGACTGCAATCCTCGCCGGCGACTTCGGTACTCGACTGAAACTCGGATCCAGCAGAAACTACGAAGGCCTCGGGACTGGACTCACGTCGATCGGTTCGCTGACGACTCAGTACGCGATCGATCACTATACTGATGACGGTTCTCTTGGTCGTTCCAGTGTCAAGATCTCGAAGATGAGCATCTCGTCTGCTGACCGTGCTATCATGGCACGTCAAGGAGCCAACTGGGTTCTCGAAGACATCGACATCACAAGTGCTGGCTTCGGTGCTGGTGTCATCGCTGAAAACGCTTCTGGTATCATGTTCTACAAGAATAACGGTATCACGATGCGTCGTGTACGTCTTCTGAACATCAAGTCTGACGGTCTCTACTCAGACTCGAACGACAAAGTTCTTGTTGAAGACTGCTTGTTCCTTCCTGTCAACACGGCAGAAGGCGATACGATCCAGACGCGCGCTGATCGTACTTCGAGCAGTGGTGCTCCTGGTCCACACCAAAAGGGCTTCGTCATGAGAGGCACCTACCTCGACATGCACTCGAAGAAGACCTCTTCTGGTAAGGGTTGCTTGGTCACCAACATGGCCGACTACGTCTACACCCATGACAGCCAGCTCGACGGCAATAACTTCGTTCACGGTACGGACGAAGGCGACTGTCAGGTCTACTGCCGTAACACCAACCGTTACGCTCGAATGAACAGCTACTCATTCGGCTACGGCATCGGTGGTTACGACAACCAGCCTGCTTCGTACAACCACCAGCTCTATGACAACTACTGGTACGACATCAACCGTGCCTTGTCGTTCACTGGCATCTCGGTGACTGGCTACTCTGGTACCAAGTCTGGTCGTGTCGACATCGTAGCTCACGACGAAACCATCGTCAAGTGCGCATCCGGTCTTCGTATCGACCGTCCGACGTCAGGTCTGTTCAGAGGCTTCGTCTTCCACAACGTCACGAGACCTATCGACCGCATCACGACAACTCTGCCTGCTGGCGGTGAGATCCAGGCATACATCTCTGACAGCCACTACACATACAACGGAACTGTACTCGTACCTCCTTCTGTTACGACTCATGCTGTCATCACCGGCGATCGAACTGTCGGTTCTGAACTGACTGGTCCGAACAGCGTCTTCGATACGTCCACTGTTCTCACTGCATTCCCTGGTGCTGTGATCACTCGTTCGTATCAGTGGCGTCGACACAAGCCGCAAGTCCAGTGGGCTGGCTGGTCTGAGCATCTCGGCTGGAAATGCGAATGGATTGACGGTGCAACGTCTGCTAGCTACACGATCACAGATGCAGATCAAGGCTGCCTCATCAGTCGTGTCGATCGTGTCCATCTGACGTTCACTGAAGCAAGTGTCGAGAAGATGGTTACGGCTCTCTCGTACGACGCGTCCTACGCAACTTCGACTCCGATTCCTCGCAGTGGAGATCTTGCTGTTCCTCTTCCGGTTCTTCCTTCGACTGGAACAGTCTCTCTTGCTGCACTCGAAGGCGCAGTAGCACTCGCTCTTCCTGATCTCATCACCGGCGAGACCAGAACGTTCCTCAACCCTGCAAGAGCTCATGAAGTCTATACCGGCAACCTGCTGACTATCGACTCCAATGGAGACATCTTGAAAGGTGCTGGTACGTTCACTAACGGTCAGGTGTTCGGCATGAAGGTGCGTCAGAAACGAGGCATCGACACAATCGACTACGTCATCAACTTTACGGTCGTAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b7770ad554504f131f702cea804879191bc7bfdb879c9027d4fbf47c0da82c9a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2735
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL2RES Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank