Protein

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Genbank accession
WEU68173.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTTKVNNRMIDGMPINVLDYGAIGDGIADDTLAVQAALNAGTSKVLFPEGTYRITSKLDLNFNHRGLTIEGVGSQSYGEFNTGKPSTLQFEGISDGEFCVTLSQVYPFKASSINIESDNWNSNGIKTEAPCRELIFDDVSIKGIAIGIEAHDTFVVRGENLGITARSKGISWGGGTTLQLENLKLQGDKTGGVRLDRGIEFVYDSLQDDSPECLTCVLVVFVNIVILLFIQITLHVK
Physico‐chemical
properties
protein length:237 AA
molecular weight: 25668,80300 Da
isoelectric point:4,74091
aromaticity:0,07595
hydropathy:0,01603

Domains

Domains [InterPro]
IPR012334
STR
5–210
IPR012334
IPR024535
ENZ
15–62
IPR024535
IPR011050
STR
15–197
IPR011050
WEU68173.1
1 237
Architecture
STR
STR 5-210 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WEU68173.1
1 237
Domain Start End Length (AA) Confidence
N-terminal 1 30 30 0,9062
Central domain 31 226 197 0,9691
C-terminal 227 237 10 0,9533
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-30
Central
31-226
C-terminal
227-237

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio virus VPMCC6
[NCBI] 		3032411 Viruses > unclassified bacterial viruses >
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WEU68173.1 [NCBI]
Genbank nucleotide accession
OQ454915 [NCBI]
CDS location
range 47659 -> 48372
strand -
CDS
ATGACAACTAAAGTAAATAATAGAATGATTGATGGTATGCCTATCAATGTTCTTGATTATGGTGCTATTGGTGACGGTATTGCTGATGATACATTGGCAGTACAGGCAGCATTAAATGCAGGGACTAGTAAAGTTTTATTCCCAGAAGGCACTTATAGAATTACATCTAAACTAGATCTAAACTTTAATCACCGAGGTTTAACAATTGAGGGTGTAGGATCTCAGTCATATGGTGAGTTTAATACAGGCAAACCTTCTACTCTACAGTTTGAAGGTATCTCAGATGGTGAGTTCTGTGTTACACTTTCTCAAGTATATCCATTCAAAGCTTCTAGTATTAATATCGAATCTGATAACTGGAACTCTAATGGTATCAAAACAGAAGCACCATGTCGAGAGTTAATCTTTGACGATGTATCAATTAAAGGTATTGCAATTGGTATTGAAGCACACGATACATTCGTTGTACGTGGTGAGAATCTTGGTATTACAGCACGCTCAAAAGGAATTTCATGGGGAGGCGGTACAACACTACAGCTTGAAAATCTTAAACTTCAGGGTGATAAGACAGGTGGTGTTCGTTTAGACCGTGGTATTGAATTTGTATATGACTCTCTTCAAGACGATTCACCAGAATGCCTAACGTGCGTATTAGTGGTTTTTGTCAATATAGTAATACTGTTGTTTATACAGATAACTCTTCATGTCAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e0344177d63236264c01bd4c869c621c7888efe6af599fb433d4f724b146167d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8222
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete nucleotide sequence of Vibrio phage VPMCC6 Kar,P. and Ghosh,K. 2025-12-15 — GenBank