Protein

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UniProt accession
A0A2H5BMZ1 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MIITDDIKEVLLALTSLTKPRARWATFKLNTAMAVLRSLFDKLLDNSVSLKDFGAKGDGVTDDTSAIKNALDFVRGKRIFLHIPEGKYIFSETLNLYQVWLSSNSGVLLKNFNGVGLDISGGSYFFRFRGDLEVNGHGVGKGDGTEAATLGANGIEFNGCRLDIIGKLQSFYHKGDAIVVNAVGNMNRSFIRTLHGYYSNGVGLRCKGTQDDCAVWTMSTYTYGNYEGGVHVSDDFQGRAWTWNCYNEGSVKSDAVGVYLGQLRFSEKIDIYSEEQASTGFELLIGANCSNLKIHDARLNRTKNLSPETCIVVGGNGGLWTQESISYQSPIRSTALTDNVARYIGKKVFGSSNDLVAEERIYGNGSIETTLHARANAVDIVKSSGESLGDAFHQYGLGYPRYTSFSYNGTKESPLPSLVGTVFQQRSYAYLGGSVRQVSGMSVDVNTIVGNSTSTSITFSLTMGGLSPQNVFRLNEDGTVELLVQGAGIISTASDGLRYKLSPPPGGGNATWVAV
Physico‐chemical
properties
protein length:515 AA
molecular weight: 55694,83520 Da
isoelectric point:6,47063
aromaticity:0,09903
hydropathy:-0,16427

Domains

Domains [InterPro]
DC_2184
STR
15–514
DC_2184
IPR012334
STR
18–396
IPR012334
IPR011050
STR
33–321
IPR011050
IPR024535
ENZ
48–98
IPR024535
A0A2H5BMZ1
1 515
Architecture
STR
STR 15-514 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A2H5BMZ1
1 515
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9777
Central domain 64 346 284 0,9832
C-terminal 347 515 168 0,9116
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-346
C-terminal
347-515

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VEN
[NCBI] 		2059879 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Trungvirus
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
5118d48b20fc6437a75cac529d78ebcc42fd437e8b28eb24eac82dce4deab021
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6670
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50