Protein

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Genbank accession
BCD83177.1 [GenBank]
Protein name
phage tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
Protein sequence
MTQLPTLTVFNGQVPDKTTMDKDTFANSVHIYLNYFNDSFVPETNTLVNNMNTLSGEVQTAANNAEASAQNAATSEANAANSELKAYKWAEEAEDVEVETGKYSAKHWAIKAQAAVATLPEGTIDDLLVATDKTWSSQKISDEFFARGEVAKPSIIVPADGAIDFSGTIESSAFATKENFIGTQDFVEWQLATDSGFTTLVDSYAGSSNLTSWTPNYGSNPSTTMYVRVRHGSDNHISEWSDVVSFMTPANTAPTINSVTWSNSTIYDNNTYDVTIDATDPDGDVLTYSVTADDANVTITQDATIPNVFHVTFPDYTADTIVNFTYTVDDGNGGSDSLTEGVTVTNNYNIMATIDSGDNDYLYDISTDANGNVFVCGYSNDGTTYNHYIAKLDNDLNLISQYTIDGGNDDYSFRMSIDGNGNVFVCGHSYDGTTYNAYIAKFDNDLNLISQYTIDSGTGTDTFISIDINSNGNVFVAGYSDDGTTYNAYIVKFDNDLNLISQYTIDSGDADYLYGISTDANGNVFVCGKSNDGTTYNHYVSKFINDLNIPSGTYSITVGSITFTLTDVAFTPTAQTWTPTAQTWSPTAQTWSPTAQTWSPTAQTWTVSTGTF
Physico‐chemical
properties
protein length:612 AA
molecular weight: 66392,87100 Da
isoelectric point:4,05003
aromaticity:0,11765
hydropathy:-0,33382

Domains

Domains [InterPro]
DC_0765
STR
48–252
DC_0765 DC_0902
SSF63829
STR
336–559
SSF63829
DC_0902
ATT
484–581
DC_0902
BCD83177.1
1 612
Architecture
STR
ATT
STR 48-252 | ATT 330-581 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BCD83177.1
1 612
Domain Start End Length (AA) Confidence
N-terminal 1 344 344 0,8475
Central domain 345 601 258 0,6395
C-terminal 602 612 10 0,2824
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-344
Central
345-601
C-terminal
602-612

Taxonomy

  Name Taxonomy ID Lineage
Phage Nitratiruptor phage NrS-3
[NCBI] 		2725865 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nitratiruptor sp. YY08-14
[NCBI] 		2724899 Campylobacterota > Epsilonproteobacteria > Nautiliales > Nitratiruptoraceae > Nitratiruptor >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BCD83177.1 [NCBI]
Genbank nucleotide accession
LC545444.1 [NCBI]
CDS location
range 35843 -> 37681
strand +
CDS
ATGACACAATTGCCGACACTGACCGTGTTTAACGGGCAGGTACCAGACAAAACAACGATGGATAAGGACACGTTCGCAAATAGTGTTCATATCTATCTCAACTATTTCAACGACAGCTTCGTGCCTGAGACAAACACACTTGTAAACAACATGAATACATTAAGTGGAGAAGTTCAAACAGCCGCAAACAATGCGGAAGCAAGCGCGCAAAATGCCGCAACGAGCGAGGCGAATGCTGCTAACAGTGAGCTAAAAGCGTACAAATGGGCTGAAGAAGCTGAAGATGTAGAAGTTGAAACGGGAAAATATAGCGCAAAGCACTGGGCAATAAAAGCCCAAGCAGCGGTTGCAACACTACCTGAAGGGACGATCGACGATCTACTTGTAGCTACTGATAAAACATGGAGCTCACAAAAGATTAGCGACGAGTTTTTTGCAAGAGGTGAAGTAGCGAAACCATCAATAATAGTTCCAGCGGATGGTGCAATAGACTTCAGCGGAACAATAGAATCGTCGGCTTTTGCCACAAAAGAAAACTTCATTGGAACTCAAGACTTTGTTGAATGGCAACTTGCAACAGATAGTGGATTTACAACTTTGGTTGACAGTTACGCCGGATCGTCAAATCTCACATCATGGACTCCGAACTATGGAAGCAACCCATCGACCACAATGTATGTAAGAGTTAGGCATGGCAGTGACAATCATATTTCAGAATGGAGCGATGTAGTTAGCTTCATGACACCAGCAAATACTGCGCCAACGATAAATTCAGTCACATGGTCAAACAGTACCATATACGACAACAATACATACGATGTGACTATTGATGCAACAGACCCAGATGGTGATGTGCTGACATACAGCGTTACAGCGGATGACGCTAATGTGACGATTACTCAAGATGCAACTATCCCGAATGTTTTTCATGTAACTTTTCCAGATTACACAGCAGACACAATAGTAAATTTTACATACACGGTGGATGATGGAAATGGTGGTTCTGACAGTCTCACAGAAGGAGTAACTGTTACAAATAATTACAATATTATGGCAACGATTGATAGTGGAGATAATGATTATTTGTATGATATATCTACAGATGCAAATGGAAACGTGTTTGTATGTGGATATAGCAATGATGGGACTACATACAACCACTACATAGCAAAGCTCGATAATGATTTAAATTTGATATCGCAATATACAATAGATGGTGGAAATGATGATTATTCATTCCGAATGTCTATTGACGGCAATGGAAATGTATTTGTATGCGGACATAGCTACGATGGAACTACATATAATGCTTACATAGCAAAGTTTGACAATGATTTGAACCTGATATCGCAATATACGATTGATAGTGGTACTGGTACTGATACTTTTATTTCAATTGATATAAATTCAAACGGAAACGTGTTTGTTGCTGGGTACAGTGACGATGGGACTACATATAATGCTTACATAGTAAAGTTCGATAATGATCTAAACCTGATATCGCAATATACAATAGATAGTGGAGATGCCGATTATTTATATGGTATATCTACAGATGCAAATGGAAATGTGTTTGTATGTGGTAAATCAAATGATGGAACTACATATAATCATTATGTTTCAAAGTTTATTAATGATCTAAATATCCCTTCTGGAACATACTCGATAACTGTTGGATCGATAACTTTTACATTAACTGATGTTGCCTTCACACCTACTGCACAAACTTGGACACCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGACAGTATCAACGGGAACATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e81d8ad1c570cbc7d6e4bb69d1e0b32f03921c99c0c03b520012ae1fe1e27e09
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7974
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic insights into the co-evolution between the temperate phages and deep-sea chemolithoautotrophic Epsilonbacteraeota, Nitratiruptor Yoshida-Takashima,Y., Takaki,Y., Yoshida,M., Nunoura,T. and Takai,K. 2022-11-01 — GenBank