Protein

View in Explore
Genbank accession
QGZ13364.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MRDRVYIVDINTKMYQVARYKQNDNNVSYNMRIVQDSIDVDLAGYTALAFFNLPSGRVTQKNCTIEDSTVYTELSHIELSEEGDVISEITLYKDDKVVTTFSTIIKVEKSINRNAIEDEPSWDIIKDILNVLSYEEERQENENVRKSNEEIRISSENVRIGNENIRIESENQRKDSEVERCESEEVRKTQEVIREANEETRKTSETTREANEEIRKTSEITREANEEIRKTNEIVRESSEETRNTNEETREIHETVRESNEEIRKTSEKTRESNENTRKASEEIRNGSEETRVANEVARQESETTREENEDLRKSNEETREENEEIRKSNENIRKASEEVRNTSEETRNTNEEARKASEEIRKTSETTRNTNEEARKVSETTRETNEETRKANEIIRQNSETKREENEELRKSNEGTRELNESTRQTSIINMQKKVDDKVDEVDNKIVEVNTAKTDMTTTVSNKITEFEKRFNELENLDTAGEILQSKETTDGQIKDTLKERLTYDFNKLDLKIEQLIAGGINVAFNKSYDTSEWIEVDGGFELSVEHNLVTQKILVSSIDKLNRKSLITSYKIIDDNNIVLFNEVAIDIEVTVVNGGSAIELIKFTINDDIESLESAYSSIETKRLLKDGLDKKANLEHTHDIYVEKVEGKELSTEDYTTEEKEKLSQLDIYKNKETKFNTNGSIIEILDNNIKYITKFNTNGSISKEKYINDILINTTITNFKKGMIEESVTNEGVI
Physico‐chemical
properties
protein length:739 AA
molecular weight: 85662,94200 Da
isoelectric point:4,75637
aromaticity:0,04330
hydropathy:-1,05129

Domains

Domains [InterPro]
Coil
Unmapped
134–154
Coil Coil Coil DC_0386 Coil DC_1694
SSF58104
STR
186–379
SSF58104
Coil
Unmapped
295–374
Coil
QGZ13364.1
1 739
Architecture
STR
STR
STR 186-382 | STR 523-739
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCDKH01
[NCBI] 		2686203 No lineage information
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ13364.1 [NCBI]
Genbank nucleotide accession
MN718463.1 [NCBI]
CDS location
range 41149 -> 43368
strand +
CDS
TTGAGAGATAGAGTTTATATTGTAGATATCAATACAAAAATGTATCAAGTAGCAAGATATAAGCAAAACGATAATAATGTATCTTATAACATGAGAATAGTACAAGATTCTATAGATGTTGATTTAGCTGGATATACAGCATTAGCATTTTTTAATTTACCAAGTGGAAGAGTTACTCAGAAAAATTGTACTATAGAAGATTCAACTGTTTATACTGAATTAAGTCATATAGAGCTTTCAGAAGAAGGAGATGTTATTTCTGAGATAACTTTATACAAAGATGATAAGGTAGTTACTACATTTTCTACAATAATAAAAGTTGAAAAAAGTATAAATAGAAATGCAATAGAGGATGAGCCTAGTTGGGATATAATAAAAGACATATTAAATGTATTAAGTTATGAAGAAGAAAGACAAGAAAATGAAAATGTAAGAAAATCTAATGAGGAAATTAGAATAAGTTCTGAAAATGTTAGAATTGGCAATGAGAATATAAGGATTGAAAGTGAAAATCAGAGAAAAGATAGTGAAGTTGAAAGATGTGAGAGTGAAGAAGTAAGAAAAACACAGGAAGTTATTAGAGAAGCTAATGAGGAAACAAGAAAAACAAGTGAAACAACAAGAGAAGCTAATGAGGAAATAAGAAAGACAAGTGAAATAACAAGAGAAGCTAATGAAGAAATAAGAAAAACAAATGAGATAGTCAGAGAGTCAAGTGAAGAAACTAGAAATACTAATGAAGAAACAAGAGAAATCCATGAGACTGTTAGAGAATCAAATGAGGAAATAAGAAAAACTAGTGAAAAAACAAGAGAATCAAATGAAAATACTAGAAAAGCAAGTGAAGAGATAAGAAATGGTAGCGAAGAAACAAGAGTTGCTAATGAAGTAGCTAGACAAGAATCAGAAACTACAAGAGAAGAAAACGAAGACCTTAGAAAAAGTAATGAAGAAACAAGAGAAGAAAATGAAGAAATAAGAAAAAGTAATGAAAATATTAGAAAAGCAAGTGAAGAAGTAAGAAACACTAGTGAAGAAACAAGAAATACTAATGAAGAAGCTAGAAAAGCAAGTGAAGAAATAAGAAAAACTAGTGAAACAACCAGAAATACCAATGAGGAAGCTAGAAAAGTTAGTGAAACAACAAGAGAAACAAATGAAGAAACAAGAAAAGCAAATGAAATAATAAGACAAAATTCAGAGACTAAACGAGAAGAGAATGAAGAGCTTAGAAAAAGTAATGAGGGAACTAGAGAACTAAATGAATCAACTAGGCAGACATCTATAATTAATATGCAGAAAAAAGTAGATGATAAAGTAGATGAGGTTGATAACAAAATAGTTGAAGTAAATACTGCTAAGACAGATATGACAACAACTGTTAGCAATAAAATAACTGAGTTTGAAAAAAGGTTCAATGAATTAGAAAATTTAGATACAGCAGGAGAAATATTACAATCAAAAGAAACAACAGATGGTCAGATAAAAGACACTTTAAAAGAGAGATTAACTTATGATTTTAATAAACTAGATTTAAAAATAGAGCAACTTATTGCTGGTGGAATAAATGTAGCATTTAATAAATCATATGATACATCTGAATGGATTGAAGTTGATGGAGGATTTGAACTTTCAGTAGAACATAACCTTGTTACTCAAAAAATATTAGTCTCTTCAATAGATAAACTTAATAGGAAAAGTTTAATTACATCTTACAAAATTATAGATGATAATAATATAGTACTATTTAATGAAGTTGCTATAGATATTGAAGTTACAGTAGTTAATGGTGGTTCTGCTATTGAACTTATAAAATTTACTATTAATGATGATATAGAGTCTCTTGAAAGTGCTTATTCTAGTATAGAGACAAAAAGATTATTAAAAGATGGATTAGATAAAAAAGCTAATTTAGAACATACTCATGATATATATGTTGAGAAAGTTGAAGGCAAAGAACTCTCTACAGAAGATTATACAACTGAAGAAAAAGAAAAACTTTCTCAATTAGATATTTATAAAAATAAAGAAACAAAATTTAATACAAATGGTTCTATAATAGAAATATTAGATAATAATATCAAGTATATTACAAAGTTTAATACAAATGGTTCTATATCAAAAGAAAAGTATATAAATGATATATTAATAAATACAACAATAACTAACTTTAAAAAAGGAATGATAGAAGAATCTGTTACAAATGAAGGGGTGATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
75ab0c80b6e0e46e3eabe629125e0e07a403b2e54e054f7259c23d9aed158f03
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of a new Clostridioides difficile Siphoviride bacteriophage from clinical strains Hinc,K., Iwanicki,A., Obuchowski,M., Martirosjan,G. and Kabala,M. 2021-02-22 — GenBank